MolNFT v1 · #191437 · protein + DNA
Open state of RAD24-RFC:9-1-1 bound to a 5' SS/DSDNA junction
8DQW: “Open state of RAD24-RFC:9-1-1 bound to a 5' SS/DSDNA junction”. Electron microscopy, 3 ligands (AGS, GDP, MG). MolNFT v1 #191437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DQW
- Type
- protein + DNA
- Length
- 2,837 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P40339, P38629, P40348, P38251, A0A8H4BW58, A0A8H4BUG7, Q02574, A0A8H8UM36
- Ligands
- AGS, GDP, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 315 | — | P40339 |
| C | — | protein | 327 | — | P38629 |
| D | — | protein | 335 | — | P40348 |
| E | — | protein | 354 | — | P38251 |
| F | — | protein | 293 | — | A0A8H4BW58 |
| G | — | protein | 340 | — | A0A8H4BUG7 |
| H | — | protein | 316 | — | Q02574 |
| A | — | protein | 522 | — | A0A8H8UM36 |
| J | — | dna | 25 | — | — |
| I | — | dna | 10 | — | — |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 4 copies · chains B, C, D, E, A
- GDP · Guanosine-5'-diphosphate · ligand · chains E
- MG · Magnesium ion · metal · 4 copies · chains B, C, D, E, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DQW · Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction · the same entry in another collection · chain I against I, TM-score 1.00
- P40348 · AlphaFold monomer V2.0 prediction for replication factor C subunit 2 (P40348) · a predicted model of the same protein · chain D against A, TM-score 0.96
- P38251 · AlphaFold monomer V2.0 prediction for replication factor C subunit 5 (P38251) · a predicted model of the same protein · chain E against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40339
- Every structure of UniProt P38629
- Every structure of UniProt P40348
- Every structure of UniProt P38251
- Every structure of UniProt A0A8H4BW58
- Every structure of UniProt A0A8H4BUG7
- Every structure of UniProt Q02574
- Every structure of UniProt A0A8H8UM36
- Elsewhere: RCSB PDB 8DQW · PDBe 8DQW · UniProt P40339 · UniProt P38629 · UniProt P40348 · UniProt P38251 · UniProt A0A8H4BW58 · UniProt A0A8H4BUG7 · UniProt Q02574 · UniProt A0A8H8UM36
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