MolNFT v1 · #190706 · protein
Cryo-EM structure of apo-state mrgd-gi complex
7Y15: “Cryo-EM structure of apo-state mrgd-gi complex”. Electron microscopy, 1 ligand (PLM). MolNFT v1 #190706 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Y15
- Type
- protein
- Length
- 1,109 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P63096, P62874, P63213, P0ABE7, Q8TDS7
- Ligands
- PLM
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 218 | — | P63096 |
| B | — | protein | 338 | — | P62874 |
| C | — | protein | 57 | — | P63213 |
| R | — | protein | 264 | — | P0ABE7, Q8TDS7 |
| S | — | protein | 232 | — | — |
Ligands and binding sites
- PLM · Palmitic acid · ligand · 3 copies · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Y15 · Cryo-EM structure of apo-state MrgD-Gi complex · the same entry in another collection · chain S against S, TM-score 1.00
- P62874 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P63213 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain C against A, TM-score 0.94
- Q8TDS7 · AlphaFold monomer V2.0 prediction for mas-related G-protein coupled receptor member D… · a predicted model of the same protein · chain R against A, TM-score 0.92
- P63096 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.80
- P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain R against A, TM-score 0.27
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63096
- Every structure of UniProt P62874
- Every structure of UniProt P63213
- Every structure of UniProt P0ABE7
- Every structure of UniProt Q8TDS7
- Elsewhere: RCSB PDB 7Y15 · PDBe 7Y15 · UniProt P63096 · UniProt P62874 · UniProt P63213 · UniProt P0ABE7 · UniProt Q8TDS7
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