MolNFT v1 · #189751 · protein
Cryo-EM structure of a class a orphan GPCR
7VUJ: “Cryo-EM structure of a class a orphan GPCR”. Electron microscopy, 3 ligands (GDP, 7ZQ, MG). MolNFT v1 #189751 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VUJ
- Type
- protein
- Length
- 1,034 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P62873, P59768, P09850, Q6DWJ6
- Ligands
- GDP, 7ZQ, MG
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 234 | — | — |
| B | — | protein | 338 | — | P62873 |
| G | — | protein | 57 | — | P59768 |
| N | — | protein | 126 | — | — |
| R | — | protein | 279 | — | P09850, Q6DWJ6 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- 7ZQ · 3-chloranyl-N-[2-oxidanylidene-2-[[(1S)-1-phenylethyl]amino]ethyl]benzamide · ligand · chains R
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P62873 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P59768 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain G against A, TM-score 0.94
- P09850 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (P09850) · a predicted model of the same protein · chain R against A, TM-score 0.20
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62873
- Every structure of UniProt P59768
- Every structure of UniProt P09850
- Every structure of UniProt Q6DWJ6
- Elsewhere: RCSB PDB 7VUJ · PDBe 7VUJ · UniProt P62873 · UniProt P59768 · UniProt P09850 · UniProt Q6DWJ6
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