MolNFT v1 · #187500 · protein + DNA
Structure of the yeast RAD24-rfc loader bound to DNA and the open 9-1- 1 clamp
7SH2: “Structure of the yeast RAD24-rfc loader bound to DNA and the open 9-1- 1 clamp”. Electron microscopy, 3 ligands (AGS, ADP, MG). MolNFT v1 #187500 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SH2
- Type
- protein + DNA
- Length
- 2,568 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P32641, P40339, P38629, P40348, P38251, A0A6A5PTK1, P48581, Q08949
- Ligands
- AGS, ADP, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 405 | — | P32641 |
| B | — | protein | 317 | — | P40339 |
| C | — | protein | 325 | — | P38629 |
| D | — | protein | 330 | — | P40348 |
| E | — | protein | 341 | — | P38251 |
| F | — | protein | 269 | — | A0A6A5PTK1 |
| G | — | protein | 292 | — | P48581 |
| H | — | protein | 266 | — | Q08949 |
| P | — | dna | 10 | — | — |
| T | — | dna | 13 | — | — |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 4 copies · chains A, B, C, D, E
- ADP · Adenosine-5'-diphosphate · ligand · chains A, E
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SH2 · Structure of the yeast Rad24-RFC loader bound to DNA and the open 9-1-1 clamp · the same entry in another collection · chain T against T, TM-score 1.00
- P40348 · AlphaFold monomer V2.0 prediction for replication factor C subunit 2 (P40348) · a predicted model of the same protein · chain D against A, TM-score 0.96
- P38251 · AlphaFold monomer V2.0 prediction for replication factor C subunit 5 (P38251) · a predicted model of the same protein · chain E against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32641
- Every structure of UniProt P40339
- Every structure of UniProt P38629
- Every structure of UniProt P40348
- Every structure of UniProt P38251
- Every structure of UniProt A0A6A5PTK1
- Every structure of UniProt P48581
- Every structure of UniProt Q08949
- Elsewhere: RCSB PDB 7SH2 · PDBe 7SH2 · UniProt P32641 · UniProt P40339 · UniProt P38629 · UniProt P40348 · UniProt P38251 · UniProt A0A6A5PTK1 · UniProt P48581 · UniProt Q08949
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