GL1X · GenesisL1 explorer

MolNFT v1 · #183795 · protein

Murine supercomplex CIII2CIV in the intermediate locked conformation

7O3E: “Murine supercomplex CIII2CIV in the intermediate locked conformation”. Electron microscopy, 12 ligands (3PE, CDL, HEM). MolNFT v1 #183795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7O3E
Type
protein
Length
5,417 residues
Chains
31
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9CZ13, Q9DB77, P00158, Q9D0M3, Q9CQB4, Q9CQ69, P99028, Q9CR68, Q99KD6, P00397, P00405, P00416, P19783, P12787, P19536, P43023, P56391, Q9CPQ1, P56393, P17665, P48772, Q8R1I1
Ligands
3PE, CDL, HEM, HEC, PC1, HEA, CUA, TGL, CU, NA, MG, ZN

Structure

electron microscopy · 28 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein446—Q9CZ13
B, M—protein420—Q9DB77
C—protein380—P00158
D—protein241—Q9D0M3
F, Q—protein101—Q9CQB4
G—protein67—Q9CQ69
H—protein67—P99028
L—protein445—Q9CZ13
N—protein380—P00158
P—protein15—Q9CR68
R—protein72—Q9CQ69
S—protein64—P99028
T—protein78—Q9CR68
I—protein111—Q99KD6
a—protein514—P00397
b—protein227—P00405
c—protein259—P00416
d—protein144—P19783
e—protein104—P12787
f—protein95—P19536
g—protein75—P43023
h—protein79—P56391
i—protein72—Q9CPQ1
k—protein49—P56393
l—protein46—P17665
m—protein43—P48772
J, U—protein31—Q8R1I1
O—protein240—Q9D0M3

Ligands and binding sites

  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · 13 copies · chains C, G, F, l, L, N, R, Q, a, c, b, i, d, g, k, m
  • CDL · Cardiolipin · ligand · 5 copies · chains C, F, G, D, L, N, Q, R, O
  • HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains C, N
  • HEC · Heme C · ligand · 2 copies · chains D, O
  • PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · ligand · 2 copies · chains L, O, a, b
  • HEA · Heme-A · ligand · 2 copies · chains a, b
  • CUA · Dinuclear copper ion · ligand · chains b
  • TGL · Tristearoylglycerol · ligand · chains G, a, l
  • CU · Copper (II) ion · metal · chains a
  • NA · Sodium ion · metal · chains a
  • MG · Magnesium ion · metal · chains a, b
  • ZN · Zinc ion · metal · chains f

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7O3E · Murine supercomplex CIII2CIV in the intermediate locked conformation · the same entry in another collection · chain P against P, TM-score 1.00

Analyse

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