MolNFT v1 · #183296 · protein + DNA + RNA
RNA polymerase II-SPT4/5-nucleosome-CHD1 structure
7NKX: “RNA polymerase II-SPT4/5-nucleosome-CHD1 structure”. Electron microscopy, 4 ligands (ADP, BEF, ZN). MolNFT v1 #183296 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NKX
- Type
- protein + DNA + RNA
- Length
- 5,788 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04050, P08518, P16370, P20434, P20435, P20436, P27999, P22139, P38902, P40422, P84233, P62799, P06897, P02281, P32657, A0A6A5PX04, P27692, P20433, P34087
- Ligands
- ADP, BEF, ZN, MG
Structure
electron microscopy · 26 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1409 | — | P04050 |
| B | — | protein | 1116 | — | P08518 |
| C | — | protein | 265 | — | P16370 |
| E | — | protein | 214 | — | P20434 |
| F | — | protein | 87 | — | P20435 |
| H | — | protein | 133 | — | P20436 |
| I | — | protein | 119 | — | P27999 |
| J | — | protein | 65 | — | P22139 |
| K | — | protein | 114 | — | P38902 |
| L | — | protein | 44 | — | P40422 |
| a | — | protein | 76 | — | P84233 |
| b | — | protein | 80 | — | P62799 |
| c | — | protein | 103 | — | P06897 |
| d | — | protein | 92 | — | P02281 |
| e | — | protein | 97 | — | P84233 |
| f | — | protein | 78 | — | P62799 |
| g | — | protein | 93 | — | P06897 |
| h | — | protein | 93 | — | P02281 |
| T | — | dna | 139 | — | — |
| N | — | dna | 128 | — | — |
| W | — | protein | 622 | — | P32657 |
| P | — | rna | 16 | — | — |
| Y | — | protein | 98 | — | A0A6A5PX04 |
| Z | — | protein | 156 | — | P27692 |
| D | — | protein | 180 | — | P20433 |
| G | — | protein | 171 | — | P34087 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains W
- BEF · Beryllium trifluoride ion · ligand · chains W
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, I, J, L
- MG · Magnesium ion · metal · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NKX · RNA polymerase II-Spt4/5-nucleosome-Chd1 structure · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04050
- Every structure of UniProt P08518
- Every structure of UniProt P16370
- Every structure of UniProt P20434
- Every structure of UniProt P20435
- Every structure of UniProt P20436
- Every structure of UniProt P27999
- Every structure of UniProt P22139
- Every structure of UniProt P38902
- Every structure of UniProt P40422
- Every structure of UniProt P84233
- Every structure of UniProt P62799
- Every structure of UniProt P06897
- Every structure of UniProt P02281
- Every structure of UniProt P32657
- Every structure of UniProt A0A6A5PX04
- Every structure of UniProt P27692
- Every structure of UniProt P20433
- Every structure of UniProt P34087
- Elsewhere: RCSB PDB 7NKX · PDBe 7NKX · UniProt P04050 · UniProt P08518 · UniProt P16370 · UniProt P20434 · UniProt P20435 · UniProt P20436 · UniProt P27999 · UniProt P22139 · UniProt P38902 · UniProt P40422 · UniProt P84233 · UniProt P62799 · UniProt P06897 · UniProt P02281 · UniProt P32657 · UniProt A0A6A5PX04 · UniProt P27692 · UniProt P20433 · UniProt P34087
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