MolNFT v1 · #181066 · protein
Allosteric modulator LY3154207 binding to dopamine-bound dopamine receptor 1 in complex with minigs protein
7LJD: “Allosteric modulator LY3154207 binding to dopamine-bound dopamine receptor 1 in complex with minigs protein”. Electron microscopy, 4 ligands (CLR, PLM, LDP). MolNFT v1 #181066 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7LJD
- Type
- protein
- Length
- 1,046 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21728, P54311, P63212
- Ligands
- CLR, PLM, LDP, G4C
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | — | protein | 285 | — | P21728 |
| A | — | protein | 238 | — | — |
| B | — | protein | 338 | — | P54311 |
| G | — | protein | 57 | — | P63212 |
| N | — | protein | 128 | — | — |
Ligands and binding sites
- CLR · Cholesterol · ligand · 5 copies · chains R
- PLM · Palmitic acid · ligand · 4 copies · chains R
- LDP · L-dopamine · ligand · chains R
- G4C · 2-[2,6-bis(chloranyl)phenyl]-1-[(1S,3R)-3-(hydroxymethyl)-1-methyl-5-(3-methyl-3-oxidanyl-butyl)-3,4-dihydro-1H-isoquinolin-2-yl]ethanone · ligand · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LJD · Allosteric modulator LY3154207 binding to dopamine-bound dopamine receptor 1 in complex… · the same entry in another collection · chain N against N, TM-score 1.00
- P54311 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P21728 · AlphaFold monomer V2.0 prediction for D(1A) dopamine receptor (P21728) · a predicted model of the same protein · chain R against A, TM-score 0.89
- P63212 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain G against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21728
- Every structure of UniProt P54311
- Every structure of UniProt P63212
- Elsewhere: RCSB PDB 7LJD · PDBe 7LJD · UniProt P21728 · UniProt P54311 · UniProt P63212
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