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MolNFT v1 · #180855 · protein

Cryo-EM structure of the human adenosine A1 receptor-GI2-protein complex bound to its endogenous agonist and an allosteric ligand

7LD3: “Cryo-EM structure of the human adenosine A1 receptor-GI2-protein complex bound to its endogenous agonist and…”. Electron microscopy, 2 ligands (ADN, XTD). MolNFT v1 #180855 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
7LD3
Type
protein
Length
888 residues
Chains
4
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P04899, P08173, P30542, P62873, P59768
Ligands
ADN, XTD

Structure

electron microscopy · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein210—P04899
R—protein288—P08173, P30542
B—protein334—P62873
G—protein56—P59768

Ligands and binding sites

  • ADN · Adenosine · ligand · chains R
  • XTD · {2-amino-4-[3,5-bis(trifluoromethyl)phenyl]thiophen-3-yl}(4-chlorophenyl)methanone · ligand · chains R

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7LD3 · Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its… · the same entry in another collection · chain R against R, TM-score 1.00
  • P62873 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 1.00
  • P59768 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain G against A, TM-score 0.93
  • P30542 · AlphaFold monomer V2.0 prediction for adenosine receptor A1 (P30542) · a predicted model of the same protein · chain R against A, TM-score 0.92
  • P04899 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.83
  • P08173 · AlphaFold monomer V2.0 prediction for muscarinic acetylcholine receptor M4 (P08173) · a predicted model of the same protein · chain R against A, TM-score 0.81

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