MolNFT v1 · #174133 · protein
Red alga C.MEROLAE photosystem I
7BLZ: “Red alga C.MEROLAE photosystem I”. Electron microscopy, 17 ligands (CLA, BCR, C7Z). MolNFT v1 #174133 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BLZ
- Type
- protein
- Length
- 2,817 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- M1VKK5, M1UU36, Q85FY7, Q85FY6, Q85G47, Q85FY0, Q85FZ1, A0A5P9RU83, Q85FQ6, A0A5P9RTH6, Q85G51, Q85FP8, Q85G73, M1VFJ4
- Ligands
- CLA, BCR, C7Z, LHG, RRX, PTY, ERG, SF4, 3PH, DGD, PGT, DGA, LMU, PQN, CL0, T7X…
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | — | protein | 173 | — | M1VKK5 |
| 2 | — | protein | 179 | — | M1UU36 |
| 3 | — | protein | 174 | — | — |
| A | — | protein | 743 | — | Q85FY7 |
| B | — | protein | 731 | — | Q85FY6 |
| C | — | protein | 80 | — | Q85G47 |
| D | — | protein | 138 | — | Q85FY0 |
| E | — | protein | 61 | — | Q85FZ1 |
| F | — | protein | 155 | — | A0A5P9RU83 |
| I | — | protein | 31 | — | Q85FQ6 |
| J | — | protein | 38 | — | A0A5P9RTH6 |
| K | — | protein | 54 | — | Q85G51 |
| L | — | protein | 136 | — | Q85FP8 |
| M | — | protein | 27 | — | Q85G73 |
| O | — | protein | 97 | — | M1VFJ4 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 132 copies · chains 1, 2, F, J, 3, A, K, B, O, L, I, M
- BCR · Beta-carotene · ligand · 22 copies · chains 2, 3, A, O, K, B, I, M, F, J, L
- C7Z · (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E}, 9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol · ligand · 13 copies · chains 1, 2, 3, A, J
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 6 copies · chains 1, 2, 3, A, B
- RRX · (3R)-beta,beta-caroten-3-ol · ligand · 5 copies · chains 1, 2, A, B, J, 3, K
- PTY · Phosphatidylethanolamine · ligand · 4 copies · chains 3, A, O, L
- ERG · Ergosterol · ligand · 3 copies · chains 1, 2, J, A
- SF4 · Iron/sulfur cluster · ligand · 3 copies · chains A, B, C
- 3PH · 1,2-diacyl-glycerol-3-sn-phosphate · ligand · 3 copies · chains 2, A, J, B, 1, F
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · 3 copies · chains B, C, I, M
- PGT · (1S)-2-{[{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate · ligand · 2 copies · chains 2, 3, B
- DGA · Diacyl glycerol · ligand · 2 copies · chains 2, A, 1, J
- LMU · Dodecyl-alpha-D-maltoside · ligand · 2 copies · chains 2, 3, A
- PQN · Phylloquinone · ligand · 2 copies · chains A, B
- CL0 · Chlorophyll A isomer · ligand · chains A, B
- T7X · Phosphatidylinositol · ligand · chains A, L
- CA · Calcium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BLZ · Red alga C.merolae Photosystem I · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M1VKK5
- Every structure of UniProt M1UU36
- Every structure of UniProt Q85FY7
- Every structure of UniProt Q85FY6
- Every structure of UniProt Q85G47
- Every structure of UniProt Q85FY0
- Every structure of UniProt Q85FZ1
- Every structure of UniProt A0A5P9RU83
- Every structure of UniProt Q85FQ6
- Every structure of UniProt A0A5P9RTH6
- Every structure of UniProt Q85G51
- Every structure of UniProt Q85FP8
- Every structure of UniProt Q85G73
- Every structure of UniProt M1VFJ4
- Elsewhere: RCSB PDB 7BLZ · PDBe 7BLZ · UniProt M1VKK5 · UniProt M1UU36 · UniProt Q85FY7 · UniProt Q85FY6 · UniProt Q85G47 · UniProt Q85FY0 · UniProt Q85FZ1 · UniProt A0A5P9RU83 · UniProt Q85FQ6 · UniProt A0A5P9RTH6 · UniProt Q85G51 · UniProt Q85FP8 · UniProt Q85G73 · UniProt M1VFJ4
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