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Ligand · CL0

CL0 · Chlorophyll A isomer

CL0, Chlorophyll A isomer (C55 H72 Mg N4 O5 +2, 893.5 g/mol), in the MolNFT structures on GenesisL1: bound in 77 records (58 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
CL0
Formula
C55 H72 Mg N4 O5 +2
Class
ligand
Structures
77
PDB entries
58

Binding sites

CL0 in 77 structures; the first of them:

  • 5L8R · The structure of plant photosystem I super-complex at 2.6 angstrom resolution. · CL0 A801 · binds TYR461, ILE544, PHE547, TYR606, ASN607, SER610, VAL611, PHE614 and 14 more
  • 5ZGB · Cryo-EM structure of the red algal PSI-LHCR · CL0 A801 · binds PHE449, TYR452, ILE534, TYR596, ASN597, SER600, ILE601, PHE604 and 11 more
  • 5ZGH · Cryo-EM structure of the red algal PSI-LHCR · CL0 A801 · binds PHE449, TYR452, ILE534, PHE537, THR538, TYR596, ASN597, SER600 and 16 more
  • 6JO5 · Structure of the green algal photosystem I supercomplex with light-harvesting complex I · CL0 A801 · binds PHE453, TYR456, ILE538, PHE541, THR542, TYR600, ASN601, SER604 and 19 more
  • 6JO6 · Structure of the green algal photosystem I supercomplex with light-harvesting complex I · CL0 A801 · binds PHE453, TYR456, VAL535, ILE538, PHE541, THR542, TYR600, ASN601 and 19 more
  • 6K33 · Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus · CL0 aA801 · binds TYR459, ILE541, PHE544, TYR603, ASN604, SER607, VAL608, PHE611 and 15 more
  • 6K61 · Cryo-EM structure of the tetrameric photosystem I from a heterocyst-forming… · CL0 A801 · binds PHE453, TYR456, ILE535, ILE538, PHE541, THR542, TYR600, ASN601 and 22 more
  • 6KMW · Structure of PSI from H. hongdechloris grown under white light condition · CL0 aA801 · binds TYR468, ILE550, PHE553, THR554, TYR612, ASN613, SER616, ILE617 and 16 more
  • 6L4U · Structure of the PSI-FCPI supercomplex from diatom · CL0 A801 · binds PHE453, TYR456, VAL535, ILE538, PHE541, THR542, TYR600, ASN601 and 21 more
  • 6QPH · Dunaliella minimal PSI complex · CL0 A1011 · binds TYR600, ASN601, SER604, ILE605, PHE608, LEU650, SER654, ILE658 and 10 more
  • 6TCL · Photosystem I tetramer · CL0 A1802 · binds ILE538, PHE541, TYR600, ASN601, ILE605, PHE608, ILE643, TRP646 and 13 more
  • 6TRA · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · CL0 A801 · binds PHE456, TYR459, ILE541, PHE544, THR545, TYR603, ASN604, SER607 and 19 more
  • 6TRC · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · CL0 A801 · binds PHE456, TYR459, VAL538, ILE541, PHE544, TYR603, ASN604, SER607 and 20 more
  • 6TRD · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · CL0 A801 · binds PHE456, TYR459, ILE541, PHE544, THR545, TYR603, ASN604, SER607 and 20 more
  • 6VPV · Trimeric Photosystem I from the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum · CL0 A801 · binds PHE452, TYR455, ILE537, PHE540, THR541, TYR599, ASN600, SER603 and 21 more
  • 7A4P · Structure of small high-light grown Chlorella ohadii photosystem I · CL0 A1011 · binds TYR456, ILE538, PHE541, THR542, TYR600, ASN601, SER604, ILE605 and 17 more
  • 7BGI · Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii · CL0 A1011 · binds TYR456, ILE538, PHE541, THR542, TYR600, ASN601, SER604, ILE605 and 18 more
  • 7BLZ · Red alga C.merolae Photosystem I · CL0 A801 · binds PHE449, TYR452, ILE534, PHE537, THR538, TYR596, ASN597, SER600 and 17 more
  • 7DR2 · Structure of GraFix PSI tetramer from Cyanophora paradoxa · CL0 aA801 · binds PHE453, TYR456, ILE538, TYR600, ASN601, SER604, VAL605, PHE608 and 17 more
  • 7EW6 · Barley photosystem I-LHCI-Lhca5 supercomplex · CL0 A801 · binds TYR453, ILE536, PHE539, THR540, TYR598, ASN599, SER602, VAL603 and 12 more
  • 7EWK · Barley photosystem I-LHCI-Lhca6 supercomplex · CL0 A801 · binds TYR453, ILE536, PHE539, THR540, TYR598, ASN599, SER602, VAL603 and 11 more
  • 7F4V · Cryo-EM structure of a primordial cyanobacterial photosystem I · CL0 aA801 · binds PHE457, TYR460, VAL552, ILE555, LEU558, CYS559, TYR617, ASN618 and 21 more

Residues it binds most

PHE 121, TRP 120, ILE 119, TYR 119, LEU 120, THR 120, SER 111, ASN 119, HIS 120, ALA 93 (residue and the binding sites it lines).

Found with

  • CLA · Chlorophyll A
  • SF4 · Iron/sulfur cluster
  • BCR · Beta-carotene
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • PQN · Phylloquinone
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • CHL · Chlorophyll B
  • CA · Calcium ion
  • LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol
  • LMT · Dodecyl-beta-D-maltoside
  • XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol

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