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Ligand · 3PH

3PH · 1,2-diacyl-glycerol-3-sn-phosphate

3PH, 1,2-diacyl-glycerol-3-sn-phosphate (C39 H77 O8 P, 705.0 g/mol), in the MolNFT structures on GenesisL1: bound in 52 records (45 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
3PH
Formula
C39 H77 O8 P
Class
ligand
Structures
52
PDB entries
45

Binding sites

3PH in 52 structures; the first of them:

  • 6E1M · Structure of AtTPC1(DDE) reconstituted in saposin A · 3PH A813 · binds PHE79, PHE83, PHE87, PHE195, ILE199, ARG200, GLU201, LEU202 and 6 more
  • 6LI9 · Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine · 3PH B602 · binds ARG86, LEU89, PHE90, THR93, THR164, SER167, LEU168, ARG348 and 4 more
  • 6LID · Heteromeric amino acid transporter b0,+AT-rBAT complex · 3PH B701 · binds ARG86, LEU89, PHE90, THR93, THR164, SER167, ARG348, ILE356 and 5 more
  • 7A0Y · Structure of dimeric sodium proton antiporter NhaA K300R variant, at pH 8.2, crystallized… · 3PH A502 · binds VAL202, ARG203, ARG204, VAL207, LEU210, PRO257, TRP258
  • 7AH9 · Substrate-engaged type 3 secretion system needle complex from Salmonella enterica… · 3PH 1A401 · binds SER6, ALA9, LEU10, LEU17, ILE20, ILE21, THR25, MET61 and 16 more
  • 7BGI · Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii · 3PH 7802 · binds LEU133, ARG137, TYR138, TRP33, ASN37, PRO38, PHE53, PRO55
  • 7DSK · Overall structure of the LAT1-4F2hc bound with JX-075 · 3PH A701 · binds THR163, PHE130, HIS358, LEU359, PRO360, SER361, ILE362, VAL378 and 8 more
  • 7DSL · Overall structure of the LAT1-4F2hc bound with JX-078 · 3PH A701 · binds PHE162, THR163, TRP134, HIS358, LEU359, PRO360, SER361, ILE362 and 14 more
  • 7R3K · Chlamydomonas reinhardtii TSP9 mutant small Photosystem I complex · 3PH 35022 · binds LEU133, ARG137, TYR138, TRP33, PHE34, ASN37, PRO38, PHE53 and 1 more
  • 7UUZ · Structure of the sodium/iodide symporter (NIS) in complex with perrhenate and sodium · 3PH A703 · binds CYS132, LEU135, GLN136, VAL139, MET142, LEU143, ILE147, ALA397 and 18 more
  • 7UV0 · Structure of the sodium/iodide symporter (NIS) in complex with iodide and sodium · 3PH A704 · binds VAL139, MET142, LEU143, ILE147, ALA397, THR400, VAL401, LEU404 and 13 more
  • 8BEH · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI membrane tip) · 3PH L701 · binds ILE30, THR33, THR34, SER37, PHE38, ILE41, LEU98, ILE101 and 5 more
  • 8BEL · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CIII membrane domain) · 3PH C405 · binds ILE97, PHE245, TRP249, VAL256, LEU257, TRP279

Residues it binds most

LEU 143, ILE 101, VAL 94, PHE 115, TYR 75, TRP 92, ALA 64, MET 73, THR 71, GLY 67 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • SF4 · Iron/sulfur cluster
  • BCR · Beta-carotene
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • CHL · Chlorophyll B
  • CL0 · Chlorophyll A isomer
  • LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol
  • PQN · Phylloquinone
  • PLM · Palmitic acid

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