MolNFT v1 · #173679 · protein
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2
7B7U: “Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #173679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7B7U
- Type
- protein
- Length
- 3,136 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- I3LJR4, A0A0B8RVL1, I3LCH3, I3LSI7, F1SKN8, A0A4X1ULF2, P60899, A0A4X1UK25, I3LN51, Q8IXW5
- Ligands
- ZN
Structure
electron microscopy · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 986 | — | I3LJR4 |
| B | — | protein | 979 | — | A0A0B8RVL1 |
| C | — | protein | 257 | — | I3LCH3 |
| E | — | protein | 209 | — | I3LSI7 |
| F | — | protein | 78 | — | F1SKN8 |
| H | — | protein | 148 | — | A0A4X1ULF2 |
| I | — | protein | 115 | — | P60899 |
| J | — | protein | 67 | — | — |
| K | — | protein | 115 | — | A0A4X1UK25 |
| L | — | protein | 44 | — | I3LN51 |
| M | — | protein | 108 | — | Q8IXW5 |
| N | — | protein | 30 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains C, I, J, L, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7B7U · Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I3LJR4
- Every structure of UniProt A0A0B8RVL1
- Every structure of UniProt I3LCH3
- Every structure of UniProt I3LSI7
- Every structure of UniProt F1SKN8
- Every structure of UniProt A0A4X1ULF2
- Every structure of UniProt P60899
- Every structure of UniProt A0A4X1UK25
- Every structure of UniProt I3LN51
- Every structure of UniProt Q8IXW5
- Elsewhere: RCSB PDB 7B7U · PDBe 7B7U · UniProt I3LJR4 · UniProt A0A0B8RVL1 · UniProt I3LCH3 · UniProt I3LSI7 · UniProt F1SKN8 · UniProt A0A4X1ULF2 · UniProt P60899 · UniProt A0A4X1UK25 · UniProt I3LN51 · UniProt Q8IXW5
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