MolNFT v1 · #172022 · protein + RNA
SARS-cov-2-NSP1-40S complex, focused on body
6ZOK: “SARS-cov-2-NSP1-40S complex, focused on body”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #172022 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZOK
- Type
- protein + RNA
- Length
- 4,202 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08865, P61247, P15880, P62701, P62753, P62081, P62241, P46781, P62280, P62277, P62263, P08708, P63220, P62244, P62266, P62847, P62854, P42677, P62861, P0DTD1, P62945
- Ligands
- MG, ZN
Structure
electron microscopy · 22 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | rna | 1232 | — | — |
| A | — | protein | 216 | — | P08865 |
| B | — | protein | 213 | — | P61247 |
| C | — | protein | 218 | — | P15880 |
| E | — | protein | 262 | — | P62701 |
| G | — | protein | 230 | — | P62753 |
| H | — | protein | 186 | — | P62081 |
| I | — | protein | 205 | — | P62241 |
| J | — | protein | 180 | — | P46781 |
| L | — | protein | 151 | — | P62280 |
| N | — | protein | 149 | — | P62277 |
| O | — | protein | 135 | — | P62263 |
| R | — | protein | 51 | — | P08708 |
| V | — | protein | 83 | — | P63220 |
| W | — | protein | 129 | — | P62244 |
| X | — | protein | 141 | — | P62266 |
| Y | — | protein | 124 | — | P62847 |
| a | — | protein | 101 | — | P62854 |
| b | — | protein | 82 | — | P42677 |
| e | — | protein | 56 | — | P62861 |
| j | — | protein | 33 | — | P0DTD1 |
| h | — | protein | 25 | — | P62945 |
Ligands and binding sites
- MG · Magnesium ion · metal · 109 copies · chains 2, a, N, E, X, I, G, O, L
- ZN · Zinc ion · metal · chains a
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZOK · SARS-CoV-2-Nsp1-40S complex, focused on body · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08865
- Every structure of UniProt P61247
- Every structure of UniProt P15880
- Every structure of UniProt P62701
- Every structure of UniProt P62753
- Every structure of UniProt P62081
- Every structure of UniProt P62241
- Every structure of UniProt P46781
- Every structure of UniProt P62280
- Every structure of UniProt P62277
- Every structure of UniProt P62263
- Every structure of UniProt P08708
- Every structure of UniProt P63220
- Every structure of UniProt P62244
- Every structure of UniProt P62266
- Every structure of UniProt P62847
- Every structure of UniProt P62854
- Every structure of UniProt P42677
- Every structure of UniProt P62861
- Every structure of UniProt P0DTD1
- Every structure of UniProt P62945
- Elsewhere: RCSB PDB 6ZOK · PDBe 6ZOK · UniProt P08865 · UniProt P61247 · UniProt P15880 · UniProt P62701 · UniProt P62753 · UniProt P62081 · UniProt P62241 · UniProt P46781 · UniProt P62280 · UniProt P62277 · UniProt P62263 · UniProt P08708 · UniProt P63220 · UniProt P62244 · UniProt P62266 · UniProt P62847 · UniProt P62854 · UniProt P42677 · UniProt P62861 · UniProt P0DTD1 · UniProt P62945
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