MolNFT v1 · #171886 · protein
Respiratory complex I from thermus thermophilus, NAD+ dataset, minor state
6ZJY: “Respiratory complex I from thermus thermophilus, NAD+ dataset, minor state”. Electron microscopy, 2 ligands (SF4, FES). MolNFT v1 #171886 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZJY
- Type
- protein
- Length
- 4,646 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q56222, Q56221, Q56223, Q56220, Q56219, Q56218, Q56224, Q5SKZ7, Q56217, Q56225, Q56226, Q56227, Q56228, Q56229, Q60019
- Ligands
- SF4, FES
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | — | protein | 437 | — | Q56222 |
| 2 | — | protein | 178 | — | Q56221 |
| 3 | — | protein | 754 | — | Q56223 |
| 4 | — | protein | 384 | — | Q56220 |
| 5 | — | protein | 196 | — | Q56219 |
| 6 | — | protein | 166 | — | Q56218 |
| 9 | — | protein | 180 | — | Q56224 |
| 7 | — | protein | 127 | — | Q5SKZ7 |
| A | — | protein | 117 | — | Q56217 |
| J | — | protein | 160 | — | Q56225 |
| K | — | protein | 95 | — | Q56226 |
| L | — | protein | 605 | — | Q56227 |
| M | — | protein | 467 | — | Q56228 |
| N | — | protein | 427 | — | Q56229 |
| H | — | protein | 353 | — | Q60019 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 7 copies · chains 1, 3, 6, 9
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains 2, 3
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZJY · Respiratory complex I from Thermus thermophilus, NAD+ dataset, minor state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56222
- Every structure of UniProt Q56221
- Every structure of UniProt Q56223
- Every structure of UniProt Q56220
- Every structure of UniProt Q56219
- Every structure of UniProt Q56218
- Every structure of UniProt Q56224
- Every structure of UniProt Q5SKZ7
- Every structure of UniProt Q56217
- Every structure of UniProt Q56225
- Every structure of UniProt Q56226
- Every structure of UniProt Q56227
- Every structure of UniProt Q56228
- Every structure of UniProt Q56229
- Every structure of UniProt Q60019
- Elsewhere: RCSB PDB 6ZJY · PDBe 6ZJY · UniProt Q56222 · UniProt Q56221 · UniProt Q56223 · UniProt Q56220 · UniProt Q56219 · UniProt Q56218 · UniProt Q56224 · UniProt Q5SKZ7 · UniProt Q56217 · UniProt Q56225 · UniProt Q56226 · UniProt Q56227 · UniProt Q56228 · UniProt Q56229 · UniProt Q60019
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