MolNFT v1 · #170977 · protein + DNA
OCT4-SOX2-bound nucleosome - SHL+6
6YOV: “OCT4-SOX2-bound nucleosome - SHL+6”. Electron microscopy, 1 ligand (PTD). MolNFT v1 #170977 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YOV
- Type
- protein + DNA
- Length
- 1,160 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P68431, P62805, P04908, P06899, P42212, Q01860, P48431
- Ligands
- PTD
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 95 | — | P68431 |
| B | — | protein | 82 | — | P62805 |
| C, G | — | protein | 110 | — | P04908 |
| D | — | protein | 93 | — | P06899 |
| F | — | protein | 80 | — | P62805 |
| H | — | protein | 92 | — | P06899 |
| I | — | dna | 131 | — | — |
| J | — | dna | 131 | — | — |
| K | — | protein | 68 | — | P42212, Q01860 |
| L | — | protein | 73 | — | P48431 |
Ligands and binding sites
- PTD · Pentanedial · ligand · 8 copies · chains A, E, B, C, H, D, G, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YOV · OCT4-SOX2-bound nucleosome - SHL+6 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68431
- Every structure of UniProt P62805
- Every structure of UniProt P04908
- Every structure of UniProt P06899
- Every structure of UniProt P42212
- Every structure of UniProt Q01860
- Every structure of UniProt P48431
- Elsewhere: RCSB PDB 6YOV · PDBe 6YOV · UniProt P68431 · UniProt P62805 · UniProt P04908 · UniProt P06899 · UniProt P42212 · UniProt Q01860 · UniProt P48431
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