Ligand · PTD
PTD · Pentanedial
PTD, Pentanedial (C5 H8 O2, 100.1 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (11 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- PTD
- Formula
- C5 H8 O2
- Class
- ligand
- Structures
- 16
- PDB entries
- 11
Binding sites
PTD in 16 structures; the first of them:
- 6HZA · X-ray structure of furin in complex with the cyclic peptide… · PTD B101 · binds GLU257, ARG1, ARG2, LYS3
- 6HZB · X-ray structure of furin in complex with the cyclic inhibitor… · PTD B101 · binds GLU257, ARG1, ARG2, LYS3
- 6HZD · X-ray structure of furin in complex with the cyclic inhibitor… · PTD B101 · binds GLU257, ARG1, ARG2, LYS4
- 6T90 · OCT4-SOX2-bound nucleosome - SHL-6 · PTD A201 · binds LYS116, LYS123
- 6Y5D · Structure of human cGAS (K394E) bound to the nucleosome · PTD A201 · binds LYS80, LYS80
- 8OTS · OCT4 and MYC-MAX co-bound to a nucleosome · PTD A201 · binds LYS79, LYS79
- 5WYD · Structural of pseudomonas aeruginosa dspi · PTD A301 · binds LYS72, PHE73, ARG179
- 6HZA · X-ray structure of furin in complex with the cyclic peptide… · PTD B101 · binds GLU257, ARG1, ARG2, LYS3
- 6HZB · X-ray structure of furin in complex with the cyclic inhibitor… · PTD B101 · binds GLU257, ARG1, ARG2, LYS3
- 6HZC · X-ray structure of furin in complex with the cyclic inhibitor… · PTD B101 · binds ARG185, ASP191, ASN192, LEU227, ASP228, LYS5
- 6HZD · X-ray structure of furin in complex with the cyclic inhibitor… · PTD B101 · binds GLU257, ARG1, ARG2, LYS4
- 6T90 · OCT4-SOX2-bound nucleosome - shl-6 · PTD A201 · binds LYS116, LYS123
Residues it binds most
LYS 72, ARG 8, GLU 7, HIS 5, LEU 5, TYR 3, ASN 2, ASP 1, GLY 2, PHE 2 (residue and the binding sites it lines).
Found with
- CA · Calcium ion
- NA · Sodium ion
- CL · Chloride ion
- PO4 · Phosphate ion
- DMS · Dimethyl sulfoxide
- 00S · 4-(aminomethyl)benzenecarboximidamide
- ZN · Zinc ion
- BVK · 2-[4-(aminomethyl)phenyl]ethanoic acid
- I3P · D-myo-inositol-1,4,5-triphosphate
- EDO · 1,2-ethanediol
- IPA · Isopropyl alcohol
- MPD · (4S)-2-methyl-2,4-pentanediol
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