MolNFT v1 · #167406 · protein
Escherichia COLI RNA polymerase and ureidothiophene-2-carboxylic acid complex
6VJS: “Escherichia COLI RNA polymerase and ureidothiophene-2-carboxylic acid complex”. X-ray diffraction, 3 ligands (QZY, ZN, MG). MolNFT v1 #167406 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VJS
- Type
- protein
- Length
- 7,106 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z4, P0A8V4, P0A8T7, P0A802, Q0P6L9
- Ligands
- QZY, ZN, MG
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 234 | — | P0A7Z4 |
| B | — | protein | 301 | — | P0A7Z4 |
| C, H | — | protein | 1336 | — | P0A8V4 |
| D | — | protein | 1164 | — | P0A8T7 |
| E | — | protein | 90 | — | P0A802 |
| G | — | protein | 229 | — | P0A7Z4 |
| I | — | protein | 1160 | — | P0A8T7 |
| J | — | protein | 76 | — | P0A802 |
| X | — | protein | 471 | — | Q0P6L9 |
| Y | — | protein | 475 | — | Q0P6L9 |
Ligands and binding sites
- QZY · 3-{[benzyl(ethyl)carbamoyl]amino}-5-(4-phenoxyphenyl) thiophene-2-carboxylic acid · ligand · chains C, D
- ZN · Zinc ion · metal · 4 copies · chains D, I
- MG · Magnesium ion · metal · 2 copies · chains D, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VJS · Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex · the same entry in another collection · chain Y against Y, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V4
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A802
- Every structure of UniProt Q0P6L9
- Elsewhere: RCSB PDB 6VJS · PDBe 6VJS · UniProt P0A7Z4 · UniProt P0A8V4 · UniProt P0A8T7 · UniProt P0A802 · UniProt Q0P6L9
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