UniProt Q0P6L9
RNA polymerase sigma factor RpoD (Q0P6L9)
RNA polymerase sigma factor RpoD (UniProt Q0P6L9): 56 experimental structures on GenesisL1, 2 ligands bound, 219 pockets. Binding sites, pockets, druggability and 3D structures in GL1X.
- UniProt
- Q0P6L9
- Protein
- RNA polymerase sigma factor RpoD
- Experimental structures
- 56
- Predicted models
- 0
- Ligands
- 2
- Pockets
- 219 · 30 records with a druggable one
Structures
56 records of Q0P6L9 in the MolNFT archive: 56 experimental, 0 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6N57 | Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation I | electron microscopy | L | 1N7 | 10 (best 0.81) |
| 6N57 | Cryo-EM structure of escherichia COLI rnap polymerase bound with trar in conformation I | electron microscopy | L | 1N7 | — |
| 6N58 | Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation II | electron microscopy | L | 1N7 | 6 (best 0.78) |
| 6N58 | Cryo-EM structure of escherichia COLI rnap polymerase bound with trar in conformation II | electron microscopy | L | 1N7 | — |
| 6N60 | Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin… | x-ray diffraction | F | — | 5 (best 0.72) |
| 6N60 | Escherichia COLI RNA polymerase SIGMA70-holoenzyme bound to upstream fork promoter DNA and microcin… | x-ray diffraction | F | — | — |
| 6N61 | Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and… | x-ray diffraction | F | — | — |
| 6N61 | Escherichia COLI RNA polymerase SIGMA70-holoenzyme bound to upstream fork promoter DNA and… | x-ray diffraction | F | — | — |
| 6N62 | Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA | x-ray diffraction | F | — | — |
| 6N62 | Escherichia COLI RNA polymerase SIGMA70-holoenzyme bound to upstream fork promoter DNA | x-ray diffraction | F | — | — |
| 6OUL | Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA | electron microscopy | L | 1N7 | 6 (best 0.79) |
| 6OUL | Cryo-EM structure of escherichia COLI rnap polymerase bound to RPSTP2 promoter DNA | electron microscopy | L | 1N7 | — |
| 6P1K | Cryo-EM structure of Escherichia coli sigma70 bound RNAP polymerase holoenzyme | electron microscopy | L | — | 8 (best 0.75) |
| 6P1K | Cryo-EM structure of escherichia COLI SIGMA70 bound rnap polymerase holoenzyme | electron microscopy | L | — | — |
| 6PSQ | Escherichia coli RNA polymerase closed complex (TRPc) with TraR and rpsT P2 promoter | electron microscopy | L | 1N7 | 8 (best 0.79) |
| 6PSQ | Escherichia COLI RNA polymerase closed complex (trpc) with trar and rpst P2 promoter | electron microscopy | L | 1N7 | — |
| 6PSR | Escherichia COLI RNA polymerase promoter unwinding intermediate (TRPI1) with trar and rpst P2… | electron microscopy | L | 1N7 | — |
| 6PSS | Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5a) with TraR and mutant… | electron microscopy | L | — | 9 (best 0.80) |
| 6PSS | Escherichia COLI RNA polymerase promoter unwinding intermediate (TRPI1.5A) with trar and mutant… | electron microscopy | L | — | — |
| 6PST | Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5b) with TraR and mutant… | electron microscopy | L | 1N7 | 10 (best 0.79) |
| 6PST | Escherichia COLI RNA polymerase promoter unwinding intermediate (TRPI1.5B) with trar and mutant… | electron microscopy | L | 1N7 | — |
| 6PSU | Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi2) with TraR and rpsT P2… | electron microscopy | L | 1N7 | 11 (best 0.79) |
| 6PSU | Escherichia COLI RNA polymerase promoter unwinding intermediate (TRPI2) with trar and rpst P2… | electron microscopy | L | 1N7 | — |
| 6PSV | Escherichia coli RNA polymerase promoter unwinding intermediate (TpreRPo) with TraR and rpsT P2… | electron microscopy | L | 1N7 | 6 (best 0.80) |
| 6PSV | Escherichia COLI RNA polymerase promoter unwinding intermediate (tprerpo) with trar and rpst P2… | electron microscopy | L | 1N7 | — |
| 6PSW | Escherichia coli RNA polymerase promoter unwinding intermediate (TRPo) with TraR and rpsT P2… | electron microscopy | L | 1N7 | 8 (best 0.82) |
| 6PSW | Escherichia COLI RNA polymerase promoter unwinding intermediate (trpo) with trar and rpst P2… | electron microscopy | L | 1N7 | — |
| 6VJS | Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex | x-ray diffraction | X, Y | — | 6 (best 0.84) |
| 6VJS | Escherichia COLI RNA polymerase and ureidothiophene-2-carboxylic acid complex | x-ray diffraction | X, Y | — | — |
| 6WMU | E. coli RNAPs70-SspA-gadA DNA complex | electron microscopy | F | — | 8 (best 0.81) |
| 6WMU | E. COLI RNAPS70-sspa-gada DNA complex | electron microscopy | F | — | — |
| 7BEG | Structures of class I bacterial transcription complexes | electron microscopy | F | — | 5 (best 0.86) |
| 7BEG | Structures of class I bacterial transcription complexes | electron microscopy | F | — | — |
| 7C97 | Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA | electron microscopy | F | — | — |
| 7C97 | Cryo-EM structure of an escherichia COLI rnap-promoter open complex (rpo) with sspa | electron microscopy | F | — | — |
| 7CHW | Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) | electron microscopy | F | — | 7 (best 0.80) |
| 7CHW | Cryo-EM structure of an escherichia COLI rnap-promoter open complex (rpo) | electron microscopy | F | — | 7 (best 0.80) |
| 7MKD | Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 1) | electron microscopy | L | 1N7 | 7 (best 0.86) |
| 7MKD | Cryo-EM structure of escherichia COLI RNA polymerase bound to lambda pr promoter DNA (class 1) | electron microscopy | L | 1N7 | — |
| 7MKE | Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 2) | electron microscopy | L | 1N7 | 8 (best 0.79) |
| 7MKE | Cryo-EM structure of escherichia COLI RNA polymerase bound to lambda pr promoter DNA (class 2) | electron microscopy | L | 1N7 | — |
| 7MKI | Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR (-5G to C) promoter DNA | electron microscopy | L | 1N7 | 6 (best 0.82) |
| 7MKI | Cryo-EM structure of escherichia COLI RNA polymerase bound to lambda pr (-5G to C) promoter DNA | electron microscopy | L | 1N7 | — |
| 7MKJ | Cryo-EM structure of Escherichia coli RNA polymerase bound to T7A1 promoter DNA | electron microscopy | L | 1N7 | 7 (best 0.84) |
| 7MKJ | Cryo-EM structure of escherichia COLI RNA polymerase bound to T7A1 promoter DNA | electron microscopy | L | 1N7 | — |
| 7N4E | Escherichia coli sigma 70-dependent paused transcription elongation complex | electron microscopy | F | — | 7 (best 0.82) |
| 7N4E | Escherichia COLI sigma 70-dependent paused transcription elongation complex | electron microscopy | F | — | — |
| 7UBM | Transcription antitermination complex: pre-engaged" Qlambda-loading complex" | electron microscopy | F | — | 7 (best 0.82) |
| 7UBN | Transcription antitermination complex: NusA-containing engaged" Qlambda-loading complex" | electron microscopy | F | — | 6 (best 0.84) |
| 8FTD | Structure of Escherichia coli CedA in complex with transcription initiation complex | electron microscopy | L | 1N7 | 7 (best 0.81) |
| 8JO2 | Structural basis of transcriptional activation by the OmpR/PhoB-family response regulator PmrA | electron microscopy | F | — | 8 (best 0.82) |
| 8TO1 | Escherichia coli RNA polymerase unwinding intermediate (I1a) at the lambda PR promoter | electron microscopy | L | 4QM | 8 (best 0.80) |
| 8TO6 | Escherichia coli RNA polymerase unwinding intermediate (I1d) at the lambda PR promoter | electron microscopy | L | 4QM | 7 (best 0.82) |
| 8TOE | Escherichia coli RNA polymerase unwinding intermediate (I1c) at the lambda PR promoter | electron microscopy | L | 1N7 | 8 (best 0.77) |
| 8TOM | Escherichia coli RNA polymerase closed complex intermediate at the lambda PR promoter | electron microscopy | L | 1N7 | 8 (best 0.81) |
| 8Y6U | Cryo-EM structure of E.coli transcription initiation complex with transcription factor GcvA | electron microscopy | F | — | 5 (best 0.86) |
Ligands
Elsewhere
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