GL1X · GenesisL1 explorer

MolNFT v1 · #163356 · protein + RNA

Ribosome nascent chain in complex with seca

6S0K: “Ribosome nascent chain in complex with seca”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #163356 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6S0K
Type
protein + RNA
Length
7,390 residues
Chains
35
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P60422, P60438, P60723, P62399, P0AG55, P0A7R1, A0A073UC57, P0A7J7, P0AA10, P0ADY3, P02413, P0ADY7, P0AG44, P0C018, P0A7K6, P0A7L3, P0AG48, P61175, P0ADZ0, P60624, P68919, P0A7L8, P0A7M2, P0A7M6, P0AG51, P0A7N4, P0A7N9, P0A7P5, P0A7Q1, P0A7Q6, A0A037YQ84
Ligands
MG, ZN

Structure

electron microscopy · 35 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna3——
A—rna2883——
B—rna120——
C—protein271—P60422
D—protein209—P60438
E—protein201—P60723
F—protein177—P62399
G—protein176—P0AG55
H—protein149—P0A7R1
I—protein125—A0A073UC57
J—protein134—P0A7J7
K—protein142—P0AA10
L—protein123—P0ADY3
M—protein144—P02413
N—protein136—P0ADY7
O—protein125—P0AG44
P—protein117—P0C018
Q—protein114—P0A7K6
R—protein117—P0A7L3
S—protein103—P0AG48
T—protein110—P61175
U—protein92—P0ADZ0
V—protein102—P60624
W—protein94—P68919
X—protein76—P0A7L8
Y—protein77—P0A7M2
Z—protein62—P0A7M6
a—protein58—P0AG51
b—protein56—P0A7N4
c—protein51—P0A7N9
d—protein46—P0A7P5
e—protein64—P0A7Q1
f—protein38—P0A7Q6
h—protein838—A0A037YQ84
k—protein57——

Ligands and binding sites

  • MG · Magnesium ion · metal · 68 copies · chains A, D, C, M, O, B, b
  • ZN · Zinc ion · metal · chains f

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6S0K · Ribosome nascent chain in complex with SecA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.