MolNFT v1 · #150855 · protein + DNA + RNA
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (cpd)
6H67: “Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (cpd)”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #150855 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H67
- Type
- protein + DNA + RNA
- Length
- 4,183 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P10964, P22138, P07703, P50106, P20434, P20435, P46669, P20436, P32529, P22139, P28000, P40422, Q01080, P47006
- Ligands
- ZN, MG
Structure
electron microscopy · 17 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1463 | — | P10964 |
| B | — | protein | 1174 | — | P22138 |
| C | — | protein | 306 | — | P07703 |
| D | — | protein | 54 | — | P50106 |
| E | — | protein | 212 | — | P20434 |
| F | — | protein | 100 | — | P20435 |
| G | — | protein | 171 | — | P46669 |
| H | — | protein | 131 | — | P20436 |
| I | — | protein | 63 | — | P32529 |
| J | — | protein | 69 | — | P22139 |
| K | — | protein | 101 | — | P28000 |
| L | — | protein | 44 | — | P40422 |
| M | — | protein | 108 | — | Q01080 |
| N | — | protein | 144 | — | P47006 |
| R | — | rna | 9 | — | — |
| T | — | dna | 21 | — | — |
| U | — | dna | 13 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H67 · Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10964
- Every structure of UniProt P22138
- Every structure of UniProt P07703
- Every structure of UniProt P50106
- Every structure of UniProt P20434
- Every structure of UniProt P20435
- Every structure of UniProt P46669
- Every structure of UniProt P20436
- Every structure of UniProt P32529
- Every structure of UniProt P22139
- Every structure of UniProt P28000
- Every structure of UniProt P40422
- Every structure of UniProt Q01080
- Every structure of UniProt P47006
- Elsewhere: RCSB PDB 6H67 · PDBe 6H67 · UniProt P10964 · UniProt P22138 · UniProt P07703 · UniProt P50106 · UniProt P20434 · UniProt P20435 · UniProt P46669 · UniProt P20436 · UniProt P32529 · UniProt P22139 · UniProt P28000 · UniProt P40422 · UniProt Q01080 · UniProt P47006
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