MolNFT v1 · #146370 · protein
Structure of the cargo bound ap-1:ARF1:TETHERIN-nef monomer
6DFF: “Structure of the cargo bound ap-1:ARF1:TETHERIN-nef monomer”. Electron microscopy, 2 ligands (GTP, MG). MolNFT v1 #146370 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DFF
- Type
- protein
- Length
- 2,063 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q10589, Q90VU7, Q10567, P84077, P22892, P35585, Q96PC3
- Ligands
- GTP, MG
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 10 | — | Q10589, Q90VU7 |
| T | — | protein | 13 | — | Q10589, Q90VU7 |
| B | — | protein | 570 | — | Q10567 |
| C | — | protein | 165 | — | P84077 |
| G | — | protein | 585 | — | P22892 |
| H | — | protein | 163 | — | P84077 |
| M | — | protein | 415 | — | P35585 |
| S | — | protein | 142 | — | Q96PC3 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains C, H
- MG · Magnesium ion · metal · 2 copies · chains C, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DFF · Structure of the cargo bound AP-1:Arf1:tetherin-Nef monomer · the same entry in another collection · chain S against S, TM-score 1.00
- Q96PC3 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit sigma-3 (Q96PC3) · a predicted model of the same protein · chain S against A, TM-score 0.98
- P84077 · AlphaFold monomer V2.0 prediction for ADP-ribosylation factor 1 (P84077) · a predicted model of the same protein · chain H against A, TM-score 0.96
- Q10567 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit beta-1 (Q10567) · a predicted model of the same protein · chain B against A, TM-score 0.95
- P22892 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit gamma-1 (P22892) · a predicted model of the same protein · chain G against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q10589
- Every structure of UniProt Q90VU7
- Every structure of UniProt Q10567
- Every structure of UniProt P84077
- Every structure of UniProt P22892
- Every structure of UniProt P35585
- Every structure of UniProt Q96PC3
- Elsewhere: RCSB PDB 6DFF · PDBe 6DFF · UniProt Q10589 · UniProt Q90VU7 · UniProt Q10567 · UniProt P84077 · UniProt P22892 · UniProt P35585 · UniProt Q96PC3
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