MolNFT v1 · #137577 · protein
X-ray crystal structure of escherichia COLI RNA polymerase and DKSA/PPGPP complex
5VSW: “X-ray crystal structure of escherichia COLI RNA polymerase and DKSA/PPGPP complex”. X-ray diffraction, 3 ligands (G4P, ZN, MG). MolNFT v1 #137577 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VSW
- Type
- protein
- Length
- 7,312 residues
- Chains
- 13
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z4, P0A8V2, P0A8T7, P0A800, P00579, P0ABS1
- Ligands
- G4P, ZN, MG
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 319 | — | P0A7Z4 |
| B | — | protein | 297 | — | P0A7Z4 |
| C, I | — | protein | 1340 | — | P0A8V2 |
| D | — | protein | 1173 | — | P0A8T7 |
| E | — | protein | 89 | — | P0A800 |
| F | — | protein | 468 | — | P00579 |
| G | — | protein | 227 | — | P0A7Z4 |
| H | — | protein | 216 | — | P0A7Z4 |
| J | — | protein | 1155 | — | P0A8T7 |
| K | — | protein | 79 | — | P0A800 |
| L | — | protein | 469 | — | P00579 |
| M | — | protein | 140 | — | P0ABS1 |
Ligands and binding sites
- G4P · Guanosine-5',3'-tetraphosphate · ligand · 3 copies · chains D, E, J, K, M
- ZN · Zinc ion · metal · 5 copies · chains D, J, M
- MG · Magnesium ion · metal · 2 copies · chains D, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VSW · X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V2
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A800
- Every structure of UniProt P00579
- Every structure of UniProt P0ABS1
- Elsewhere: RCSB PDB 5VSW · PDBe 5VSW · UniProt P0A7Z4 · UniProt P0A8V2 · UniProt P0A8T7 · UniProt P0A800 · UniProt P00579 · UniProt P0ABS1
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