UniProt P0ABS1
RNA polymerase-binding transcription factor DksA (P0ABS1)
RNA polymerase-binding transcription factor DksA (UniProt P0ABS1): 10 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 14 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P0ABS1
- Protein
- RNA polymerase-binding transcription factor DksA
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 14 · 4 records with a druggable one
Structures
11 records of P0ABS1 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1TJL | Crystal structure of transcription factor DksA from E. coli | x-ray diffraction | A, B, C, D, E, F, G, H, I, J | — | — |
| 1TJL | Crystal structure of transcription factor dksa from E. COLI | x-ray diffraction | A, B, C, D, E, F, G, H, I, J | — | — |
| 5VSW | X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex | x-ray diffraction | M | ZN, G4P | 2 (best 0.85) |
| 5VSW | X-ray crystal structure of escherichia COLI RNA polymerase and DKSA/PPGPP complex | x-ray diffraction | M | ZN, G4P | — |
| 5W1T | X-ray crystal structure of Escherichia coli RNA polymerase and DksA complex | x-ray diffraction | M, N | ZN | 6 (best 0.83) |
| 5W1T | X-ray crystal structure of escherichia COLI RNA polymerase and dksa complex | x-ray diffraction | M, N | ZN | — |
| 7KHE | Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with DksA/ppGpp | electron microscopy | M | MG, ZN, G4P | 4 (best 0.79) |
| 7KHE | Escherichia COLI RNA polymerase and RRNBP1 promoter pre-open complex with DKSA/PPGPP | electron microscopy | M | ZN, G4P | — |
| 7KHI | Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp | electron microscopy | M | MG, ZN, G4P | 2 (best 0.85) |
| 7KHI | Escherichia COLI RNA polymerase and RRNBP1 promoter complex with DKSA/PPGPP | electron microscopy | M | ZN, G4P | — |
| P0ABS1 | AlphaFold monomer V2.0 prediction for RNA polymerase-binding transcription factor dksa (P0ABS1) | predicted | A | — | — |
Ligands
Experiment against prediction
- 1TJL chain J against the predicted model P0ABS1: TM-score 0.96, RMSD 1.36 Å
- 1TJL chain J against the predicted model P0ABS1: TM-score 0.96, RMSD 1.36 Å
- 1TJL chain E against the predicted model P0ABS1: TM-score 0.94, RMSD 1.28 Å
- 1TJL chain E against the predicted model P0ABS1: TM-score 0.94, RMSD 1.28 Å
- 1TJL chain H against the predicted model P0ABS1: TM-score 0.94, RMSD 1.40 Å
- 1TJL chain H against the predicted model P0ABS1: TM-score 0.94, RMSD 1.40 Å
- 1TJL chain C against the predicted model P0ABS1: TM-score 0.94, RMSD 1.58 Å
- 1TJL chain C against the predicted model P0ABS1: TM-score 0.94, RMSD 1.58 Å
- 1TJL chain G against the predicted model P0ABS1: TM-score 0.93, RMSD 1.31 Å
- 1TJL chain G against the predicted model P0ABS1: TM-score 0.93, RMSD 1.31 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.