MolNFT v1 · #128997 · protein
Quinolin-6-yloxyacetamides are microtubule destabilizing agents that bind to the colchicine site of tubulin
5O7A: “Quinolin-6-yloxyacetamides are microtubule destabilizing agents that bind to the colchicine site of tubulin”. X-ray diffraction, 5 ligands (GTP, GDP, 9N5). MolNFT v1 #128997 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5O7A
- Type
- protein
- Length
- 2,089 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P81947, Q6B856, P63043, E1BQ43
- Ligands
- GTP, GDP, 9N5, ACP, MG
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 437 | — | P81947 |
| B | — | protein | 421 | — | Q6B856 |
| C | — | protein | 440 | — | P81947 |
| D | — | protein | 419 | — | Q6B856 |
| E | — | protein | 118 | — | P63043 |
| F | — | protein | 254 | — | E1BQ43 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B, C, D
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains B, D
- 9N5 · (2~{R})-2-(3-ethynylquinolin-6-yl)oxy-2-methoxy-~{N}-[(1~{E})-1-methoxyimino-2-methyl-propan-2-yl]ethanamide · ligand · 2 copies · chains B, D
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains F
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O7A · Quinolin-6-yloxyacetamides are microtubule destabilizing agents that bind to the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81947
- Every structure of UniProt Q6B856
- Every structure of UniProt P63043
- Every structure of UniProt E1BQ43
- Elsewhere: RCSB PDB 5O7A · PDBe 5O7A · UniProt P81947 · UniProt Q6B856 · UniProt P63043 · UniProt E1BQ43
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