MolNFT v1 · #128296 · protein
Tubulin darpin room-temperature structure in complex with colchicine determined by serial millisecond crystallography
5NM5: “Tubulin darpin room-temperature structure in complex with colchicine determined by serial millisecond…”. X-ray diffraction, 4 ligands (GTP, GDP, LOC). MolNFT v1 #128296 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NM5
- Type
- protein
- Length
- 994 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P81947, Q6B856
- Ligands
- GTP, GDP, LOC, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 422 | — | P81947 |
| B | — | protein | 417 | — | Q6B856 |
| F | — | protein | 155 | — | — |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A, B
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- LOC · N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide · ligand · chains A, B
- MG · Magnesium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NM5 · Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81947
- Every structure of UniProt Q6B856
- Elsewhere: RCSB PDB 5NM5 · PDBe 5NM5 · UniProt P81947 · UniProt Q6B856
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