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MolNFT v1 · #126965 · protein

KIF2C-darpin fusion protein bound to tubulin

5MIO: “KIF2C-darpin fusion protein bound to tubulin”. X-ray diffraction, 5 ligands (GTP, GDP, LOC). MolNFT v1 #126965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5MIO
Type
protein
Length
1,329 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P81947, D0VWY9, Q99661
Ligands
GTP, GDP, LOC, ANP, MG

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein429—P81947
B—protein423—D0VWY9
C—protein477—Q99661

Ligands and binding sites

  • GTP · Guanosine-5'-triphosphate · ligand · chains A, B
  • GDP · Guanosine-5'-diphosphate · ligand · chains B
  • LOC · N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide · ligand · chains A, B
  • ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains C
  • MG · Magnesium ion · metal · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5MIO · KIF2C-darpin fusion protein bound to tubulin · the same entry in another collection · chain A against A, TM-score 1.00
  • Q99661 · AlphaFold monomer V2.0 prediction for kinesin-like protein KIF2C (Q99661) · a predicted model of the same protein · chain C against A, TM-score 0.64

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