MolNFT v1 · #116129 · protein + DNA
Crystal structure of thermus thermophilus product complex for transcription initiation with ATP and CTP
5D4C: “Crystal structure of thermus thermophilus product complex for transcription initiation with ATP and CTP”. X-ray diffraction. MolNFT v1 #116129 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5D4C
- Type
- protein + DNA
- Length
- 7,018 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Z9H6, Q8RQE9, Q8RQE8, Q8RQE7, Q5SKW1
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, K | — | protein | 231 | — | Q9Z9H6 |
| B, L | — | protein | 222 | — | Q9Z9H6 |
| C | — | protein | 1112 | — | Q8RQE9 |
| D, N | — | protein | 1486 | — | Q8RQE8 |
| E, O | — | protein | 94 | — | Q8RQE7 |
| F, P | — | protein | 346 | — | Q5SKW1 |
| G, R | — | dna | 15 | — | — |
| H | — | dna | 20 | — | — |
| M | — | protein | 1080 | — | Q8RQE9 |
| S | — | dna | 18 | — | — |
Compared structures
- Q8RQE7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (Q8RQE7) · a predicted model of the same protein · chain E against A, TM-score 0.97
- Q9Z9H6 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (Q9Z9H6) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z9H6
- Every structure of UniProt Q8RQE9
- Every structure of UniProt Q8RQE8
- Every structure of UniProt Q8RQE7
- Every structure of UniProt Q5SKW1
- Elsewhere: RCSB PDB 5D4C · PDBe 5D4C · UniProt Q9Z9H6 · UniProt Q8RQE9 · UniProt Q8RQE8 · UniProt Q8RQE7 · UniProt Q5SKW1
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