MolNFT v1 · #112753 · protein + DNA

Saga dub module UBP8/SGF11/SUS1/SGF73 bound to ubiqitinated nucleosome

4ZUX: “Saga dub module UBP8/SGF11/SUS1/SGF73 bound to ubiqitinated nucleosome”. X-ray diffraction. MolNFT v1 #112753 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4ZUX
Type: protein + DNA
Length: 5,242 residues
Chains: 40
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P84233, P62799, P06897, P02281, P50102, Q6WNK7, A6ZWK1, P0CG47, P53165

Structure

x-ray diffraction · 25 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, K	—	protein	97	—	P84233
B, L	—	protein	83	—	P62799
C, M	—	protein	103	—	P06897
D, N	—	protein	95	—	P02281
E, O	—	protein	97	—	P84233
F, P	—	protein	78	—	P62799
G, Q	—	protein	105	—	P06897
H, R	—	protein	93	—	P02281
I, S	—	dna	145	—	—
J, T	—	dna	145	—	—
U	—	protein	447	—	P50102
V	—	protein	89	—	Q6WNK7
W, g	—	protein	90	—	A6ZWK1
X, c, h, m	—	protein	76	—	P0CG47
Y	—	protein	82	—	P53165
Z	—	protein	451	—	P50102
a	—	protein	90	—	Q6WNK7
b	—	protein	89	—	A6ZWK1
d, i	—	protein	89	—	P53165
e	—	protein	453	—	P50102
f	—	protein	85	—	Q6WNK7
j	—	protein	447	—	P50102
k	—	protein	86	—	Q6WNK7
l	—	protein	93	—	A6ZWK1
n	—	protein	86	—	P53165

Compared structures

P50102 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 8 (P50102) · a predicted model of the same protein · chain U against A, TM-score 0.99
P06897 · AlphaFold monomer V2.0 prediction for histone H2A type 1 (P06897) · a predicted model of the same protein · chain C against A, TM-score 0.94
Q6WNK7 · AlphaFold monomer V2.0 prediction for transcription and mRNA export factor SUS1 (Q6WNK7) · a predicted model of the same protein · chain k against A, TM-score 0.92
P53165 · AlphaFold monomer V2.0 prediction for saga-associated factor 73 (P53165) · a predicted model of the same protein · chain n against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84233
Every structure of UniProt P62799
Every structure of UniProt P06897
Every structure of UniProt P02281
Every structure of UniProt P50102
Every structure of UniProt Q6WNK7
Every structure of UniProt A6ZWK1
Every structure of UniProt P0CG47
Every structure of UniProt P53165
Elsewhere: RCSB PDB 4ZUX · PDBe 4ZUX · UniProt P84233 · UniProt P62799 · UniProt P06897 · UniProt P02281 · UniProt P50102 · UniProt Q6WNK7 · UniProt A6ZWK1 · UniProt P0CG47 · UniProt P53165

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