UniProt P0CG47
Polyubiquitin-B (P0CG47)
Polyubiquitin-B (UniProt P0CG47): 272 experimental structures on GenesisL1, 22 ligands bound, 98 pockets. Binding sites, pockets, druggability and 3D structures in GL1X.
- UniProt
- P0CG47
- Protein
- Polyubiquitin-B
- Experimental structures
- 272
- Predicted models
- 0
- Ligands
- 22
- Pockets
- 98 · 23 records with a druggable one
Structures
272 records of P0CG47 in the MolNFT archive: 272 experimental, 0 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2MBB | Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex | solution nmr | B | — | — |
| 2MBB | Solution structure of the human polymerase iota UBM1-ubiquitin complex | solution nmr | B | — | — |
| 2MRO | Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1) | solution nmr | A | — | — |
| 2MRO | Structure of the complex of ubiquitin and the uba domain from DNA- damage-inducible 1 protein (DDI1) | solution nmr | A | — | — |
| 2MSG | Solid-state NMR structure of ubiquitin | solid-state nmr | A | — | — |
| 2MSG | Solid-state NMR structure of ubiquitin | solid-state nmr | A | — | — |
| 2N13 | Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb | solution nmr | B, C | — | — |
| 2N13 | Complex structure of myub (1080-1122) of human myosin VI with K63-diub | solution nmr | B, C | — | — |
| 2Y5B | Structure of USP21 in complex with linear diubiquitin-aldehyde | x-ray diffraction | B, F | — | — |
| 2Y5B | Structure of USP21 in complex with linear diubiquitin-aldehyde | x-ray diffraction | B, F | — | — |
| 3O65 | Crystal structure of a Josephin-ubiquitin complex: Evolutionary restraints on ataxin-3… | x-ray diffraction | B, D, F, H | — | — |
| 3O65 | Crystal structure of a josephin-ubiquitin complex: evolutionary restraints on ataxin-3… | x-ray diffraction | B, D, F, H | — | — |
| 3OJ3 | Crystal structure of the A20 ZnF4 and ubiquitin complex | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 3OJ3 | Crystal structure of the A20 ZNF4 and ubiquitin complex | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 3OJ4 | Crystal structure of the A20 ZnF4, ubiquitin and UbcH5A complex | x-ray diffraction | B, E | — | — |
| 3OJ4 | Crystal structure of the A20 ZNF4, ubiquitin and UBCH5A complex | x-ray diffraction | B, E | — | — |
| 3ONS | Crystal structure of Human Ubiquitin in a new crystal form | x-ray diffraction | A | — | — |
| 3ONS | Crystal structure of human ubiquitin in a new crystal form | x-ray diffraction | A | — | — |
| 3PTF | X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin | x-ray diffraction | C, D | — | — |
| 3PTF | X-ray structure of the non-covalent complex between UBCH5A and ubiquitin | x-ray diffraction | C, D | — | — |
| 3ZLZ | Lys6-linked tri-ubiquitin | x-ray diffraction | A, B | — | — |
| 3ZLZ | LYS6-linked tri-ubiquitin | x-ray diffraction | A, B | — | — |
| 3ZNH | Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl. | x-ray diffraction | B | — | — |
| 3ZNH | Crimean congo hemorrhagic fever virus otu domain in complex with ubiquitin-propargyl. | x-ray diffraction | B | — | — |
| 4UEL | UCH-L5 in complex with ubiquitin-propargyl bound to the RPN13 DEUBAD domain | x-ray diffraction | B | — | — |
| 4UEL | Uch-L5 in complex with ubiquitin-propargyl bound to the RPN13 deubad domain | x-ray diffraction | B | — | — |
| 4UF6 | UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G | x-ray diffraction | B, E, H, K | — | — |
| 4UF6 | Uch-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G | x-ray diffraction | B, E, H, K | — | — |
| 4WHV | E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and… | x-ray diffraction | A, F, G, L | — | — |
| 4WHV | E3 ubiquitin-protein ligase RNF8 in complex with ubiquitin-conjugating enzyme E2 N and… | x-ray diffraction | A, F, G, L | — | — |
| 4WLR | Crystal structure of MUCH37-HRPN13 ctd-hub complex | x-ray diffraction | C | — | — |
| 4WUR | The crystal structure of the MERS-CoV papain-like protease (C111S) with human ubiquitin | x-ray diffraction | B | — | — |
| 4WUR | The crystal structure of the MERS-cov papain-like protease (C111S) with human ubiquitin | x-ray diffraction | B | — | — |
| 4WZP | Ser65 phosphorylated ubiquitin, major conformation | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 4WZP | SER65 phosphorylated ubiquitin, major conformation | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 4XOF | Observing the overall rocking motion of a protein in a crystal - Orthorhombic Ubiquitin crystals… | x-ray diffraction | A | — | — |
| 4XOF | Observing the overall rocking motion of a protein in a crystal - orthorhombic ubiquitin crystals… | x-ray diffraction | A | — | — |
| 4ZFR | Catalytic domain of SST2 F403A mutant bound to ubiquitin | x-ray diffraction | B | — | — |
| 4ZFT | Catalytic domain of Sst2 F403W mutant bound to ubiquitin | x-ray diffraction | B, D | ZN | — |
| 4ZFT | Catalytic domain of SST2 F403W mutant bound to ubiquitin | x-ray diffraction | B, D | — | — |
| 4ZPZ | Crystal Structure of Semi-synthetic Ubiquitin with Phospho-Ser65 and Ala46Cys | x-ray diffraction | A, B | — | — |
| 4ZPZ | Crystal structure of semi-synthetic ubiquitin with phospho-SER65 and ALA46CYS | x-ray diffraction | A, B | — | — |
| 4ZUX | Saga dub module UBP8/SGF11/SUS1/SGF73 bound to ubiqitinated nucleosome | x-ray diffraction | X, c, h, m | — | — |
| 5BNB | Crystal structure of a UBE2S-ubiquitin conjugate | x-ray diffraction | E, F, G, I | — | — |
| 5CAW | Structure of pediculus humanus parkin bound to phospho-ubiquitin | x-ray diffraction | B, D | — | — |
| 5CRA | Structure of the SdeA DUB Domain | x-ray diffraction | D, C | GVE | — |
| 5CRA | Structure of the sdea dub domain | x-ray diffraction | D, C | — | — |
| 5CVM | USP46~UBIQUITIN bea covalent complex | x-ray diffraction | B | — | — |
| 5CVN | WDR48 (2-580):USP46~ubiquitin ternary complex | x-ray diffraction | D | — | 3 (best 0.77) |
| 5CVN | WDR48 (2-580):USP46~UBIQUITIN ternary complex | x-ray diffraction | D | — | — |
| 5CVO | WDR48:USP46~ubiquitin ternary complex | x-ray diffraction | C, F | — | 7 (best 0.80) |
| 5CVO | WDR48:USP46~UBIQUITIN ternary complex | x-ray diffraction | C, F | — | — |
| 5D0K | Structure of UbE2D2:RNF165:Ub complex | x-ray diffraction | B, E, H, K | — | 8 (best 0.65) |
| 5D0K | Structure of UBE2D2:RNF165:UB complex | x-ray diffraction | B, E, H, K | — | — |
| 5D0M | Structure of UbE2D2:RNF165:Ub complex | x-ray diffraction | B | PO4 | 3 (best 0.68) |
| 5D0M | Structure of UBE2D2:RNF165:UB complex | x-ray diffraction | B | — | — |
| 5DFL | Crystal structure of UBE2K~UBIQUITIN conjugate | x-ray diffraction | B | — | — |
| 5DK8 | Human ubiquitin in the P1 space group | x-ray diffraction | A, B | MG | — |
| 5DK8 | Human ubiquitin in the P1 space group | x-ray diffraction | A, B | — | — |
| 5E6J | Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe | x-ray diffraction | C, F | — | — |
212 records more on the page itself.
Ligands
- AYE · prop-2-en-1-amine · in 19 records
- SO4 · Sulfate ion · in 10 records
- ZN · Zinc ion · in 10 records
- MG · Magnesium ion · in 5 records
- PO4 · Phosphate ion · in 5 records
- 3CN · 3-aminopropane · in 3 records
- GVE · Methyl 4-aminobutanoate · in 3 records
- NEH · Ethanamine · in 3 records
- ABU · Gamma-amino-butanoic acid · in 1 record
- BR · Bromide ion · in 1 record
- CA · Calcium ion · in 1 record
- CL · Chloride ion · in 1 record
- ETA · Ethanolamine · in 1 record
- GZM · 4-[(3',5'-dichloro[1,1'-biphenyl]-4-yl)methyl]-N-ethyl-1-(methoxyacetyl)piperidine-4-carboxamide · in 1 record
- ME7 · 1,1'-ethane-1,2-diylbis(1h-pyrrole-2,5-dione) · in 1 record
- NA · Sodium ion · in 1 record
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · in 1 record
- NI · Nickel (II) ion · in 1 record
- NO3 · Nitrate ion · in 1 record
- RIB · alpha-D-ribofuranose · in 1 record
- SCN · Thiocyanate ion · in 1 record
- Z3V · 2-(ethylamino)ethane-1-thiol · in 1 record
Experiment against prediction
- 5L9T chain S against the predicted model P34244: TM-score 0.33, RMSD 4.59 Å
Elsewhere
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