Ligand · SY8
SY8 · 5-azanylpentan-2-one
SY8, 5-azanylpentan-2-one (C5 H11 N O, 101.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- SY8
- Formula
- C5 H11 N O
- Class
- ligand
- Structures
- 4
- PDB entries
- 3
Binding sites
SY8 in 4 structures; the first of them:
- 7B5L · Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly… · SY8 U101 · binds CYS357, ARG74, GLY75, CYS86
- 8R5H · Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34… · SY8 C1101 · binds ASN85, CYS93, SER138, ARG74, GLY75, CYS368
- 7B5L · Ubiquitin ligation to F-box protein substrates by scf-rbr E3-E3 super- assembly… · SY8 U101 · binds CYS357, ARG74, GLY75, CYS86
- 7B5N · Ubiquitin ligation to F-box protein substrates by scf-rbr E3-E3 super- assembly… · SY8 U101 · binds CYS357, ARG74, GLY75, CYS86
Residues it binds most
CYS 4, ARG 4, GLY 4, ASN 1, SER 1 (residue and the binding sites it lines).
Found with
- ZN · Zinc ion
- 759 · (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide
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