Ligand · NI
NI · Nickel (II) ion
NI, Nickel (II) ion (Ni +2, 58.7 g/mol), in the MolNFT structures on GenesisL1: bound in 1,352 records (1,095 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- NI
- Formula
- Ni +2
- Class
- metal
- Structures
- 1,352
- PDB entries
- 1,095
Binding sites
NI in 1,352 structures; the first of them:
- 4X3K · Crystal structure of chromobox homolog 7 (CBX7) chromodomain with H3K27me3 peptide · NI A101 · binds HIS5, GLU8, HIS47
- 4XIC · ANTPHD WITH 15BP di-thioate modified DNA DUPLEX · NI B101 · binds DG1
- 4XKN · Crystal structure of NikA from Staphylococcus aureus in complex with Ni(L-His)2… · NI A501 · binds ARG325, SER370
- 4XRF · Crystal structure of MepR like protein complexed with pseudoligands · NI A209 · binds TYR84, HIS85, ARG90
- 4Y4R · Crystal structure of ribosomal oxygenase NO66 dimer mutant · NI A701 · binds HIS340, ASP342, HIS405
- 4Z42 · Crystal structure of urease from Yersinia enterocolitica · NI C601 · binds HIS139, HIS141, GLY172, HIS224, HIS251, HIS277, GLY282, HIS325 and 1 more
- 4Z8G · Chimera of Tropomodulin-1 and Leiomodin-1 Actin-Binding Site 2 (TL1 ABS2) · NI A501 · binds HIS423, TYR452, HIS453
- 4ZMW · Crystal structure of human P-cadherin (enc-X-dimer) · NI A305 · binds ASP67, HIS104, GLU135
- 5A4I · The mechanism of Hydrogen activation by NiFE-hydrogenases · NI L602 · binds CYS76, VAL78, CSO79, ARG509, CYS576, CYS579
- 5B7Z · Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ketose-3-Epimerase with Ni2+ · NI A305 · binds GLU149, ASP182, HIS185, HIS208, ARG214, GLU243
- 5BU6 · Structure of BpsB deaceylase domain from Bordetella bronchiseptica · NI A401 · binds ASP113, ASP114, HIS184, HIS189
- 5C3Q · Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and… · NI A401 · binds HIS214, ASP216, HIS271
Residues it binds most
HIS 2046, ASP 896, GLU 806, CYS 167, GLY 158, SER 110, GLN 100, KCX 104, DG 81, LYS 79 (residue and the binding sites it lines).
Found with
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