Research workbench
Cryo-EM MAP of a yeast minimal preinitiation complex interacting with the mediator head module
Analyse Cryo-EM MAP of a yeast minimal preinitiation complex interacting with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J1O
- Type
- protein
- Length
- 1,120 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0D3YMY9, P32569, P38304, P32570, P32585, P34162, P38782
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 94 | — | A0A0D3YMY9 |
| I | — | protein | 318 | — | P32569 |
| J | — | protein | 159 | — | P38304 |
| K | — | protein | 88 | — | P32570 |
| L | — | protein | 231 | — | P32585 |
| M | — | protein | 205 | — | P34162 |
| N | — | protein | 25 | — | P38782 |
Compared structures
- 3J1O · Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head… · the same entry in another collection · chain N against N, TM-score 1.00
- P32585 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain L against A, TM-score 0.90
- P34162 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain M against A, TM-score 0.88
- P38304 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain J against A, TM-score 0.70
- P32570 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain K against A, TM-score 0.61
- P38782 · AlphaFold monomer V2.0 prediction for mediator of RNA polymerase II transcription subunit… · a predicted model of the same protein · chain N against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D3YMY9
- Every structure of UniProt P32569
- Every structure of UniProt P38304
- Every structure of UniProt P32570
- Every structure of UniProt P32585
- Every structure of UniProt P34162
- Every structure of UniProt P38782
- Elsewhere: RCSB PDB 3J1O · PDBe 3J1O · UniProt A0A0D3YMY9 · UniProt P32569 · UniProt P38304 · UniProt P32570 · UniProt P32585 · UniProt P34162 · UniProt P38782
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