Research workbench
NMR solution structure of a peptide nucleic acid complexed with RNA
Analyse NMR solution structure of a peptide nucleic acid complexed with RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 176D
- Type
- RNA
- Length
- 6 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3')
- Ligands
- APN, CPN, GPN, TPN
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3') | rna | 6 | — | — |
Ligands and binding sites
- APN · 2-aminoethylglycine-carbonylmethylene-adenine · ligand · 2 copies · chains B
- CPN · 2-aminoethylglycine-carbonylmethylene-cytosine · ligand · 2 copies · chains B
- GPN · 2-aminoethylglycine-carbonylmethylene-guanine · ligand · chains B
- TPN · 2-aminoethylglycine-carbonylmethylene-thymine · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 176D · NMR solution structure of a peptide nucleic acid complexed with RNA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 176D · PDBe 176D
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