Research workbench
Cryoem structure of sigmas-transcription initiation complex with activator crl
Analyse Cryoem structure of sigmas-transcription initiation complex with activator crl in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OMF
- Type
- protein + DNA
- Length
- 3,708 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z6, P0A8V4, P0A8T7, P0A802, S5ZIY8, A0A0F7J6B7
- Ligands
- ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 233 | — | P0A7Z6 |
| B | — | protein | 223 | — | P0A7Z6 |
| C | — | protein | 1340 | — | P0A8V4 |
| D | — | protein | 1336 | — | P0A8T7 |
| E | — | protein | 79 | — | P0A802 |
| F | — | protein | 278 | — | S5ZIY8 |
| J | — | protein | 127 | — | A0A0F7J6B7 |
| T | — | dna | 43 | — | — |
| N | — | dna | 49 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OMF · CryoEM structure of SigmaS-transcription initiation complex with activator Crl · the same entry in another collection · chain N against N, TM-score 1.00
- P0A7Z6 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (P0A7Z6) · a predicted model of the same protein · chain B against A, TM-score 0.95
- P0A802 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (P0A802) · a predicted model of the same protein · chain E against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z6
- Every structure of UniProt P0A8V4
- Every structure of UniProt P0A8T7
- Every structure of UniProt P0A802
- Every structure of UniProt S5ZIY8
- Every structure of UniProt A0A0F7J6B7
- Elsewhere: RCSB PDB 6OMF · PDBe 6OMF · UniProt P0A7Z6 · UniProt P0A8V4 · UniProt P0A8T7 · UniProt P0A802 · UniProt S5ZIY8 · UniProt A0A0F7J6B7
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