Bacteriorhodopsin, 1 ps state, real-space refined against 15% extrapolated MAP

Structure

x-ray diffraction · 1 distinct chain.

Ligands and binding sites

• L2P · 2,3-di-phytanyl-glycerol · ligand · 3 copies · chains A
• RET · Retinal · ligand · chains A
• TRD · Tridecane · ligand · chains A
• D10 · Decane · ligand · chains A
• HP6 · Heptane · ligand · chains A
• MYS · Pentadecane · ligand · chains A
• C14 · Tetradecane · ligand · chains A
• OCT · N-octane · additive · 3 copies · chains A
• UND · Undecane · additive · 2 copies · chains A
• DD9 · nonane · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6GA4 · Bacteriorhodopsin, 1 ps state, real-space refined against 15% extrapolated map · the same entry in another collection · chain A against A, TM-score 1.00
• P02945 · AlphaFold monomer V2.0 prediction for bacteriorhodopsin (P02945) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P02945
• Elsewhere: RCSB PDB 6GA4 · PDBe 6GA4 · UniProt P02945