Ligand · DD9
DD9 · nonane
DD9, nonane (C9 H20, 128.3 g/mol), in the MolNFT structures on GenesisL1: bound in 52 records (47 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- DD9
- Formula
- C9 H20
- Class
- additive
- Structures
- 52
- PDB entries
- 47
Binding sites
DD9 in 52 structures; the first of them:
- 5B6W · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds VAL177, LEU181, SER214, GLY218, LEU221, ILE222, ARG225
- 5H2H · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2I · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2L · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2N · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2O · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2P · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A313 · binds GLY218, ARG225
- 5KYM · Crystal Structure of the 1-acyl-sn-glycerophosphate (LPA) acyltransferase, PlsC, from… · DD9 A304 · binds TYR20, TYR24, GLY25, VAL28, GLU48, PHE52, TYR117
- 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · DD9 L304 · binds PRO61, TYR148
- 6GA7 · Bacteriorhodopsin, 240FS state, real-space refined against 10% extrapolated MAP · DD9 A312 · binds GLY218, LEU221, ARG225
- 6GAF · Bacteriorhodopsin, 590 fs state, real-space refined against 15% extrapolated structure… · DD9 A312 · binds GLY218, LEU221, ARG225
- 6GUX · Dark-adapted structure of Archaerhodopsin-3 at 100K · DD9 A308 · binds ALA143, SER146, TRP147, PHE150
- 7VGV · Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure… · DD9 A304 · binds LEU21, MET24, LEU225, THR228, ILE229, ILE232, SER233, ILE237 and 3 more
- 7XE4 · structure of a membrane-bound glycosyltransferase · DD9 F1901 · binds TYR633, SER634, TYR637
- 7YE7 · Crystal structure of SARS-CoV-2 soluble dimeric ORF9b · DD9 D101 · binds VAL15, ILE19, LEU21, ILE44, LEU46, LEU52, VAL76, VAL94 and 7 more
- 8F6Y · Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with etomidate… · DD9 D605 · binds ILE382, MET386, ILE429, ILE433, ILE408, VAL379, ILE382, MET386
- 5KYM · Crystal structure of the 1-acyl-sn-glycerophosphate (lpa) acyltransferase, plsc, from… · DD9 A304 · binds TYR20, TYR24, GLY25, VAL28, GLU48, PHE52, TYR117
- 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · DD9 L304 · binds PRO61, TYR148
- 5NC5 · Crystal structure of acrbz in complex with antibiotic puromycin · DD9 A1107
Residues it binds most
LEU 54, ILE 33, GLY 41, PHE 30, ARG 27, TYR 18, ALA 19, VAL 13, TRP 16, SER 12 (residue and the binding sites it lines).
Found with
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