Ligand · DD9
DD9 · nonane
DD9, nonane (C9 H20, 128.3 g/mol), in the MolNFT structures on GenesisL1: bound in 56 records (48 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- DD9
- Formula
- C9 H20
- Class
- additive
- Structures
- 56
- PDB entries
- 48
Binding sites
DD9 in 56 structures; the first of them:
- 5B6W · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds VAL177, LEU181, SER214, GLY218, LEU221, ILE222, ARG225
- 5H2H · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2I · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2L · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2N · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2O · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A611 · binds GLY218, ARG225
- 5H2P · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · DD9 A313 · binds GLY218, ARG225
- 5KYM · Crystal Structure of the 1-acyl-sn-glycerophosphate (LPA) acyltransferase, PlsC, from… · DD9 A304 · binds TYR20, TYR24, GLY25, VAL28, GLU48, PHE52, TYR117
- 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · DD9 L304 · binds PRO61, TYR148
- 6GA3 · Bacteriorhodopsin, 33 ms state, ensemble refinement · DD9 A312 · binds VAL177, LEU181, SER214, GLY218, LEU221, ILE222, ARG225
- 6GA7 · Bacteriorhodopsin, 240FS state, real-space refined against 10% extrapolated MAP · DD9 A312 · binds GLY218, LEU221, ARG225
- 6GAC · Bacteriorhodopsin, 490 fs state, real-space refined against 15% extrapolated structure… · DD9 A312 · binds VAL177, LEU181, SER214, GLY218, LEU221, ILE222, ARG225
- 6GAF · Bacteriorhodopsin, 590 fs state, real-space refined against 15% extrapolated structure… · DD9 A312 · binds GLY218, LEU221, ARG225
- 6GUX · Dark-adapted structure of Archaerhodopsin-3 at 100K · DD9 A308 · binds ALA143, SER146, TRP147, PHE150
- 7VGV · Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure… · DD9 A304 · binds LEU21, MET24, LEU225, THR228, ILE229, ILE232, SER233, ILE237 and 3 more
- 7XE4 · structure of a membrane-bound glycosyltransferase · DD9 F1901 · binds TYR633, SER634, TYR637
- 7YE7 · Crystal structure of SARS-CoV-2 soluble dimeric ORF9b · DD9 D101 · binds VAL15, ILE19, LEU21, ILE44, LEU46, LEU52, VAL76, VAL94 and 7 more
- 8DN2 · Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state… · DD9 A505 · binds VAL304
- 8F6Y · Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with etomidate… · DD9 D605 · binds ILE382, MET386, ILE429, ILE433, ILE408, VAL379, ILE382, MET386
- 8F6Z · Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with… · DD9 B603 · binds ILE429, ILE433, ILE408, ILE411, VAL379, ILE382, MET386, ILE423
- 5KYM · Crystal structure of the 1-acyl-sn-glycerophosphate (lpa) acyltransferase, plsc, from… · DD9 A304 · binds TYR20, TYR24, GLY25, VAL28, GLU48, PHE52, TYR117
- 5LRI · Photosynthetic reaction center mutant with GLUL212 replaced with TRP (chain L, EL212W) · DD9 L304 · binds PRO61, TYR148
Residues it binds most
LEU 56, ILE 37, GLY 43, PHE 30, ARG 29, TYR 18, VAL 17, ALA 19, TRP 16, SER 14 (residue and the binding sites it lines).
Found with
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