Ligand · TRD
TRD · Tridecane
TRD, Tridecane (C13 H28, 184.4 g/mol), in the MolNFT structures on GenesisL1: bound in 46 records (37 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- TRD
- Formula
- C13 H28
- Class
- ligand
- Structures
- 46
- PDB entries
- 37
Binding sites
TRD in 46 structures; the first of them:
- 4XDJ · Crystal structure of human two pore domain potassium ion channel TREK2 (K2P10.1) in an… · TRD A606 · binds THR171, THR172, ILE197, PHE200, GLY201, LEU279, THR280, THR281 and 4 more
- 5B6V · A three dimensional movie of structural changes in bacteriorhodopsin: resting state… · TRD A601 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 2 more
- 5B6W · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 2 more
- 5H2H · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds MET145, LEU146, LEU149, TYR150, SER183
- 5H2I · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds MET145, LEU146, LEU149, TYR150, SER183
- 5H2J · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 2 more
- 5H2L · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds MET145, LEU146, LEU149, TYR150, SER183
- 5H2M · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 2 more
- 5H2N · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds MET145, LEU146, LEU149, TYR150, SER183
- 5H2O · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A601 · binds MET145, LEU146, LEU149, TYR150, SER183
- 5H2P · A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained… · TRD A303 · binds MET145, LEU146, LEU149, TYR150, SER183
- 6GA3 · Bacteriorhodopsin, 33 ms state, ensemble refinement · TRD A303 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, SER183, PRO186 and 1 more
- 6GA5 · Bacteriorhodopsin, 3 ps state, REAL-SPACE REFINEMED AGAINST 10% EXTRAPOLATED MAP · TRD A303 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 1 more
- 6GA7 · Bacteriorhodopsin, 240FS state, real-space refined against 10% extrapolated MAP · TRD A303 · binds MET145, LEU146, LEU149, TYR150, SER183
- 6GAC · Bacteriorhodopsin, 490 fs state, real-space refined against 15% extrapolated structure… · TRD A303 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 1 more
- 6GAF · Bacteriorhodopsin, 590 fs state, real-space refined against 15% extrapolated structure… · TRD A303 · binds MET145, LEU146, LEU149, TYR150, SER183
- 6GAH · Bacteriorhodopsin, 680 fs state, real-space refined against 15% extrapolated structure… · TRD A303 · binds THR142, MET145, LEU146, LEU149, TYR150, PHE153, PHE154, SER183 and 1 more
- 6LPK · A2AR crystallized in EROCOC17+4, LCP-SFX at 293 K · TRD A2420
- 6LPL · A2AR crystallized in EROCOC17+4, SS-ROX at 100 K · TRD A2420
- 6PW1 · Cytochrome c Oxidase delta 16 · TRD A601 · binds MET53, LEU80, TRP81, PRO82
Residues it binds most
LEU 80, PHE 52, MET 54, THR 31, TYR 48, TRP 38, SER 41, VAL 30, ILE 27, GLY 31 (residue and the binding sites it lines).
Found with
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.