Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7Z8P9
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6E34006Ba44d9Ee2bE5413a6C530b3ba4036e9A0
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- Q7Z8P9
- Pockets
- 1 · best druggability 0.50
Structure
1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 153 | 46% helix, 16% strand | Q7Z8P9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.50 | 0.76 | 28 | empty |
Compared structures
- 6XPT · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to UDP · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6XPT · Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to udp · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6XPV · Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to dtdp · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6XPV · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to dTDP · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6XPW · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to CDP · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 6XPW · Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to cdp · an experimental structure of the same protein · chain A against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z8P9
- Elsewhere: UniProt Q7Z8P9 · AlphaFold DB Q7Z8P9
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