MolNFT v1 · #169883 · protein
Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to cdp
6XPW: “Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to cdp”. X-ray diffraction, 2 ligands (CDP, PO4). MolNFT v1 #169883 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XPW
- Type
- protein
- Length
- 932 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7Z8P9
- Ligands
- CDP, PO4
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 155 | — | Q7Z8P9 |
| B, H | — | protein | 154 | — | Q7Z8P9 |
| C | — | protein | 158 | — | Q7Z8P9 |
| E | — | protein | 157 | — | Q7Z8P9 |
| G | — | protein | 154 | — | Q7Z8P9 |
Ligands and binding sites
- CDP · Cytidine-5'-diphosphate · ligand · chains B
- PO4 · Phosphate ion · ion · 5 copies · chains A, C, E, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XPW · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to CDP · the same entry in another collection · chain H against H, TM-score 1.00
- Q7Z8P9 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z8P9
- Elsewhere: RCSB PDB 6XPW · PDBe 6XPW · UniProt Q7Z8P9
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