UniProt Q7Z8P9
Nucleoside diphosphate kinase (Q7Z8P9)
Nucleoside diphosphate kinase (UniProt Q7Z8P9), EC 2.7.4.6: 11 experimental structures and 1 predicted model on GenesisL1, 8 ligands bound, 7 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q7Z8P9
- Protein
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- Experimental structures
- 11
- Predicted models
- 1
- Ligands
- 8
- Pockets
- 7 · 2 records with a druggable one
Structures
12 records of Q7Z8P9 in the MolNFT archive: 11 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6AGY | Aspergillus fumigatus AF293 ndk | x-ray diffraction | A | — | — |
| 6XP4 | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 | x-ray diffraction | A, B, C, D, E, F | — | — |
| 6XP7 | Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to ADP | x-ray diffraction | A, B, C | ADP | 6 (best 0.63) |
| 6XP7 | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to ADP | x-ray diffraction | A, B, C | ADP | — |
| 6XPS | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to GDP | x-ray diffraction | A, B, C | GDP, MG | — |
| 6XPT | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to udp | x-ray diffraction | A, B, C, E, G, H | UDP, MG | — |
| 6XPU | Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to IDP | x-ray diffraction | A, B, C | IDP, MG | — |
| 6XPU | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to idp | x-ray diffraction | A, B, C | IDP, MG | — |
| 6XPV | Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to dTDP | x-ray diffraction | A, B, C, E, G, H | TYD | — |
| 6XPV | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to dtdp | x-ray diffraction | A, B, C, E, G, H | TYD | — |
| 6XPW | Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to cdp | x-ray diffraction | A, B, C, E, G, H | PO4, CDP | — |
| Q7Z8P9 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) | predicted | A | — | 1 (best 0.50) |
Ligands
- MG · Magnesium ion · in 4 records
- ADP · Adenosine-5'-diphosphate · in 2 records
- IDP · Inosine-5'-diphosphate · in 2 records
- TYD · Thymidine-5'-diphosphate · in 2 records
- CDP · Cytidine-5'-diphosphate · in 1 record
- GDP · Guanosine-5'-diphosphate · in 1 record
- PO4 · Phosphate ion · in 1 record
- UDP · Uridine-5'-diphosphate · in 1 record
Experiment against prediction
- 6AGY chain A against the predicted model Q7Z8P9: TM-score 0.99, RMSD 0.36 Å
- 6XPT chain A against the predicted model Q7Z8P9: TM-score 0.99, RMSD 0.57 Å
- 6XPV chain A against the predicted model Q7Z8P9: TM-score 0.98, RMSD 0.55 Å
- 6XPV chain A against the predicted model Q7Z8P9: TM-score 0.98, RMSD 0.55 Å
- 6XPW chain B against the predicted model Q7Z8P9: TM-score 0.98, RMSD 0.59 Å
- 6XPV chain C against the predicted model Q7Z8P9: TM-score 0.99, RMSD 0.57 Å
- 6XPV chain C against the predicted model Q7Z8P9: TM-score 0.99, RMSD 0.57 Å
- 6XPT chain C against the predicted model Q7Z8P9: TM-score 0.98, RMSD 0.59 Å
- 6XP4 chain A against the predicted model Q7Z8P9: TM-score 0.97, RMSD 0.55 Å
- 6XPT chain B against the predicted model Q7Z8P9: TM-score 0.97, RMSD 0.60 Å
Elsewhere
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