MolNFT v1 · #169882 · protein
Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to dtdp
6XPV: “Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to dtdp”. X-ray diffraction, 1 ligand (TYD). MolNFT v1 #169882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XPV
- Type
- protein
- Length
- 922 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7Z8P9
- Ligands
- TYD
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, G | — | protein | 154 | — | Q7Z8P9 |
| C, H | — | protein | 153 | — | Q7Z8P9 |
Ligands and binding sites
- TYD · Thymidine-5'-diphosphate · ligand · 6 copies · chains A, B, C, E, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XPV · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to dTDP · the same entry in another collection · chain H against H, TM-score 1.00
- Q7Z8P9 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z8P9
- Elsewhere: RCSB PDB 6XPV · PDBe 6XPV · UniProt Q7Z8P9
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