MolNFT v1 · #169880 · protein
Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to udp
6XPT: “Nucleoside diphosphate kinase from aspergillus fumgiatus AF293 bound to udp”. X-ray diffraction, 2 ligands (UDP, MG). MolNFT v1 #169880 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XPT
- Type
- protein
- Length
- 923 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7Z8P9
- Ligands
- UDP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, H | — | protein | 153 | — | Q7Z8P9 |
| B | — | protein | 155 | — | Q7Z8P9 |
| C, E, G | — | protein | 154 | — | Q7Z8P9 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 6 copies · chains A, B, C, E, G, H
- MG · Magnesium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XPT · Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to UDP · the same entry in another collection · chain H against H, TM-score 1.00
- Q7Z8P9 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z8P9
- Elsewhere: RCSB PDB 6XPT · PDBe 6XPT · UniProt Q7Z8P9
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