UniProt Q79VD7
Cytochrome c oxidase subunit 1 (Q79VD7)
Cytochrome c oxidase subunit 1 (UniProt Q79VD7), EC 7.1.1.9: 6 experimental structures and 1 predicted model on GenesisL1, 16 ligands bound, 31 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q79VD7
- Protein
- Cytochrome c oxidase subunit 1
- EC
- 7.1.1.9
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 16
- Pockets
- 31 · 3 records with a druggable one
Structures
7 records of Q79VD7 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7Q21 | III2-IV2 respiratory supercomplex from Corynebacterium glutamicum | electron microscopy | D, d | 7PH, 9XX, TRD, MG, CDL, HAS | 11 (best 0.90) |
| 7Q21 | III2-IV2 respiratory supercomplex from corynebacterium glutamicum | electron microscopy | D, d | 7PH, 9XX, TRD, MG, CDL, HAS | — |
| 7QHM | Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum… | electron microscopy | D, Q | HAS, CU, MN, CA, AZI, CDL | 11 (best 0.90) |
| 7QHM | Cytochrome bcc-AA3 supercomplex (respiratory supercomplex III2/IV2) from corynebacterium glutamicum… | electron microscopy | D, Q | HAS, CU, MN, CA, AZI, CDL | — |
| 7QHO | Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum… | electron microscopy | D, Q | CDL, HAS, CU, CA, 3PE, MN | 9 (best 0.89) |
| 7QHO | Cytochrome bcc-AA3 supercomplex (respiratory supercomplex III2/IV2) from corynebacterium glutamicum… | electron microscopy | D, Q | CDL, HAS, CU, CA, 3PE, MN | — |
| Q79VD7 | AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 1 (Q79VD7) | predicted | A | — | — |
Ligands
- CA · Calcium ion · in 6 records
- CDL · Cardiolipin · in 6 records
- CU · Copper (II) ion · in 6 records
- HAS · Heme-as · in 6 records
- PLM · Palmitic acid · in 6 records
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · in 4 records
- 9YF · (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate · in 4 records
- DGA · Diacyl glycerol · in 4 records
- IX7 · [(2~{R})-3-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4, 5-tris(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{S})-10-methylhenicosanoate · in 4 records
- MN · Manganese (II) ion · in 4 records
- 7PH · (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate · in 2 records
- 9XX · (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate · in 2 records
- AZI · Azide ion · in 2 records
- MG · Magnesium ion · in 2 records
- OXY · Oxygen molecule · in 2 records
- TRD · Tridecane · in 2 records
Experiment against prediction
- 7Q21 chain D against the predicted model Q79VD7: TM-score 0.95, RMSD 1.74 Å
- 7Q21 chain D against the predicted model Q79VD7: TM-score 0.95, RMSD 1.74 Å
- 7Q21 chain d against the predicted model Q79VD7: TM-score 0.95, RMSD 1.84 Å
- 7Q21 chain d against the predicted model Q79VD7: TM-score 0.95, RMSD 1.84 Å
- 7QHO chain Q against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
- 7QHO chain Q against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
- 7QHO chain D against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
- 7QHO chain D against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
- 7QHM chain Q against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
- 7QHM chain Q against the predicted model Q79VD7: TM-score 0.95, RMSD 1.82 Å
Elsewhere
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