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Ligand · 9YF

9YF · (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate

9YF, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate (C44 H85 O13 P, 853.1 g/mol), in the MolNFT structures on GenesisL1: bound in 24…

Component
9YF
Formula
C44 H85 O13 P
Class
ligand
Structures
24
PDB entries
14

Binding sites

9YF in 24 structures; the first of them:

  • 6ADQ · Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis · 9YF K202 · binds PHE140, ILE141, GLY69, VAL71, GLU72, PHE75, PHE79, CYS24 and 16 more
  • 7E1V · Cryo-EM structure of apo hybrid respiratory supercomplex consisting of Mycobacterium… · 9YF M503 · binds TRP231, TRP246, GLU425
  • 7E1W · Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium… · 9YF M503 · binds TRP231, TRP246, GLU425
  • 7E1X · Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium… · 9YF M503 · binds TRP231, TRP246, GLU425
  • 7Q21 · III2-IV2 respiratory supercomplex from Corynebacterium glutamicum · 9YF L201 · binds VAL59, GLU60, TRP63, ILE67, LEU142, CYS27, SER28, ILE32 and 12 more
  • 7QHM · Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium… · 9YF A503 · binds ALA180, GLY183, GLY184, ILE186, LYS187, ASN188, ASN191, TRP181 and 5 more
  • 7QHO · Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium… · 9YF A503 · binds LEU176, ILE179, ALA180, GLY183, GLY184, ILE186, LYS187, ASN188 and 7 more
  • 7RH5 · Mycobacterial CIII2CIV2 supercomplex, Inhibitor free · 9YF O303 · binds LEU278, LEU279, PRO111, TRP112, LEU113, ALA115, ALA116, PHE120 and 13 more

Residues it binds most

ILE 112, TRP 124, LEU 84, GLY 85, VAL 89, ALA 91, SER 48, PHE 65, GLU 100, LYS 62 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • FES · Fe2/s2 (inorganic) cluster
  • HEC · Heme C
  • HEM · Protoporphyrin IX containing Fe
  • MQ9 · Menaquinone-9
  • PLM · Palmitic acid
  • CU · Copper (II) ion
  • HEA · Heme-A
  • 9Y0 · (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate
  • 9XX · (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate
  • CA · Calcium ion
  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine

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