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Ligand · MQ9

MQ9 · Menaquinone-9

MQ9, Menaquinone-9 (C56 H80 O2, 785.2 g/mol), in the MolNFT structures on GenesisL1: bound in 18 records (17 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MQ9
Formula
C56 H80 O2
Class
ligand
Structures
18
PDB entries
17

Binding sites

MQ9 in 18 structures; the first of them:

  • 6HWH · Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis · MQ9 M302 · binds MET247, TRP250, ILE258, MET121, LEU124, ALA125, PHE128, PHE129 and 11 more
  • 7UTD · The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium… · MQ9 B401 · binds LYS212, GLN213, SER214, CYS226, PHE228, TYR229, MET287, PRO289 and 7 more
  • 7UUS · The CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Full… · MQ9 B401 · binds LYS212, GLN213, SER214, CYS226, PHE228, TYR229, MET287, PRO289 and 7 more
  • 8E9G · Mycobacterial respiratory complex I with both qui positions modelled · MQ9 B202 · binds TRP29, THR32, PHE33, GLY34, LEU35, ALA39, ILE40, MET42 and 34 more
  • 6ADQ · Respiratory complex CIII2CIV2SOD2 from mycobacterium smegmatis · MQ9 B607 · binds LEU55, THR56, PHE104, VAL105, ALA258, SER261, GLY262, PHE265 and 10 more
  • 6ET5 · Reaction centre light harvesting complex 1 from blc. virids · MQ9 M409 · binds VAL26, TYR29, ILE39, ILE42, TRP100, LEU212, LEU213, ALA216 and 16 more
  • 6HWH · Structure of a functional obligate respiratory supercomplex from mycobacterium smegmatis · MQ9 M302 · binds MET247, TRP250, ILE258, MET121, LEU124, ALA125, PHE128, PHE129 and 11 more
  • 6LUM · Structure of mycobacterium smegmatis succinate dehydrogenase 2 · MQ9 D203 · binds GLY64, PHE67, ILE68, TRP72, GLN73

Residues it binds most

PHE 98, LEU 86, ILE 76, ALA 86, MET 73, VAL 69, TYR 73, THR 58, TRP 65, GLY 53 (residue and the binding sites it lines).

Found with

  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • CDL · Cardiolipin
  • HEC · Heme C
  • CU · Copper (II) ion
  • 9YF · (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate
  • PLM · Palmitic acid
  • 9Y0 · (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate
  • HEA · Heme-A
  • 9XX · (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate
  • HAS · Heme-as
  • F3S · FE3-S4 cluster

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