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Ligand · MQ9

MQ9 · Menaquinone-9

MQ9, Menaquinone-9 (C56 H80 O2, 785.2 g/mol), in the MolNFT structures on GenesisL1: bound in 32 records (23 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MQ9
Formula
C56 H80 O2
Class
ligand
Structures
32
PDB entries
23

Binding sites

MQ9 in 32 structures; the first of them:

  • 6ET5 · Reaction centre light harvesting complex 1 from Blc. virids · MQ9 M409 · binds VAL26, TYR29, PHE30, VAL31, GLY35, VAL36, ILE39, ILE42 and 26 more
  • 6HWH · Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis · MQ9 M302 · binds MET247, TRP250, ILE258, MET121, LEU124, ALA125, PHE128, PHE129 and 11 more
  • 6LUM · Structure of Mycobacterium smegmatis succinate dehydrogenase 2 · MQ9 D203 · binds PHE60, GLY64, PHE67, ILE68, TRP72, GLN73, TRP96
  • 7E1W · Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium… · MQ9 N607 · binds PHE39, PHE45, GLU49, LEU52, VAL56, ILE60, VAL63, LEU232 and 8 more
  • 7NKZ · Cryo-EM structure of the cytochrome bd oxidase from M. tuberculosis at 2.5 A resolution · MQ9 A702 · binds ARG8, TRP9, GLY12, ILE13, VAL16, TYR17, ILE20, ASN333 and 13 more
  • 7QHO · Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium… · MQ9 A504 · binds THR177, ILE178, PRO181, MET182, ILE207, SER103, VAL46, LEU49 and 7 more
  • 7RH5 · Mycobacterial CIII2CIV2 supercomplex, Inhibitor free · MQ9 E603 · binds VAL142, LEU146, ILE149, LEU150, PHE153, PHE156, ALA174, LEU175 and 16 more
  • 7RH6 · Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open · MQ9 O304 · binds GLY272, MET273, TRP276, ILE277, VAL281, ILE284, MET121, VAL122 and 23 more

Residues it binds most

LEU 147, PHE 160, ILE 140, ALA 145, MET 119, VAL 132, THR 114, TRP 116, TYR 120, GLY 102 (residue and the binding sites it lines).

Found with

  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • CDL · Cardiolipin
  • HEC · Heme C
  • CU · Copper (II) ion
  • 9YF · (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate
  • PLM · Palmitic acid
  • HEA · Heme-A
  • 9Y0 · (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate
  • 9XX · (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate
  • HAS · Heme-as
  • CA · Calcium ion

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