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Ligand · IX7

IX7 · [(2~{R})-3-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4, 5-tris(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{S})-10-methylhenicosanoate

IX7, [(2~{R})-3-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3…

Component
IX7
Formula
C70 H131 O24 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

IX7 in 3 structures; the first of them:

  • 7QHO · Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium… · IX7 I202 · binds LEU58, LEU62, PHE74, LEU75, GLN79, ARG350, CYS32, GLY35 and 6 more
  • 7QHM · Cytochrome bcc-AA3 supercomplex (respiratory supercomplex III2/IV2) from corynebacterium… · IX7 H204 · binds PHE74, GLN79, ARG350, GLY35, GLN36, ILE37, GLY57, HIS58 and 2 more
  • 7QHO · Cytochrome bcc-AA3 supercomplex (respiratory supercomplex III2/IV2) from corynebacterium… · IX7 I202 · binds LEU58, LEU62, PHE74, LEU75, GLN79, ARG350, GLY35, GLN36 and 5 more

Residues it binds most

LEU 5, GLN 6, GLY 6, ILE 6, ARG 6, HIS 6, PHE 6, VAL 6, CYS 2, LYS 1 (residue and the binding sites it lines).

Found with

  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • 9YF · (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1r,2r,3r,4r, 5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate
  • CDL · Cardiolipin
  • CUA · Dinuclear copper ion
  • DGA · Diacyl glycerol
  • FES · Fe2/s2 (inorganic) cluster
  • HAS · Heme-as
  • HEC · Heme C
  • HEM · Protoporphyrin IX containing Fe
  • IZL · [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S}, 4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S}, 6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S}, 6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohe
  • LYC · Lycopene
  • MQ9 · Menaquinone-9

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