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Ligand · AZI

AZI · Azide ion

AZI, Azide ion (N3 -1, 42.0 g/mol), in the MolNFT structures on GenesisL1: bound in 67 records (49 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
AZI
Formula
N3 -1
Class
ion
Structures
67
PDB entries
49

Binding sites

AZI in 67 structures; the first of them:

  • 5A12 · Crystal structure of Chlorite Dismutase from Magnetospirillum sp. in complex with azide · AZI A251 · binds HIS170, ARG183, LYS184, LEU185, THR198, PHE200
  • 5AG2 · SOD-3 azide complex · AZI A196 · binds HIS26, HIS30, HIS31, TYR34, HIS74, GLN142, HIS159
  • 5DN9 · Crystal structure of Candida boidinii formate dehydrogenase complexed with NAD+ and azide · AZI A502 · binds PRO68, PHE69, GLY92, VAL93, ASN119, ARG258, HIS311
  • 5IBP · Caspase 3 V266M · AZI A301 · binds LYS53, GLY66, THR67, ASP68, VAL69
  • 5JDT · Structure of Spin-labelled T4 lysozyme mutant L118C-R1 at 100K · AZI A206
  • 5MBA · Binding mode of azide to ferric aplysia limacina myoglobin. crystallographic analysis at… · AZI A149 · binds PHE43, VAL63, ARG66, ILE67, HIS95
  • 5NYW · Anbu (ancestral beta-subunit) from Yersinia bercovieri · AZI J301 · binds ARG31, ARG7, THR140, GLN141
  • 5O4Q · Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces… · AZI B403 · binds TYR230, TYR231, HIS294, TYR231
  • 5T30 · Human MnSOD-azide complex · AZI A205 · binds HIS26, HIS30, HIS31, TYR34, HIS74, GLN143, ASP159, HIS163
  • 5Z85 · The structure of azide-bound cytochrome c oxidase determined using the another batch… · AZI A606 · binds TRP236, GLY239, HIS240, VAL243, HIS290, HIS291
  • 5ZCQ · Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM… · AZI A606 · binds HIS240, TYR244, HIS290, THR309
  • 6BFJ · Caspase-3 Mutant - T245D,S249D · AZI A301 · binds LYS53, ARG64, SER65, GLY66, THR67, ASP68, VAL69
  • 6BFO · Caspase-3 Mutant- T245D · AZI A205 · binds LYS53, ARG64, SER65, GLY66, THR67, ASP68, VAL69
  • 6BG4 · Caspase-3 Mutant- T152D · AZI A304 · binds LYS137, THR140, ASN141, ARG144, GLU190, PHE193, TYR195
  • 6D4B · Crystal structure of Candida boidinii formate dehydrogenase V123A mutant complexed with… · AZI A502 · binds PRO68, PHE69, GLY92, VAL93, ASN119, ARG258, HIS311
  • 6M0A · The heme-bound structure of the chloroplast protein At3g03890 · AZI A402 · binds PHE194, ASP196, PHE197
  • 6NKC · Crystal Structure of the Lipase Lip_vut1 from Goat Rumen metagenome. · AZI A202 · binds SER159
  • 6R2U · Zinc-alpha2-Glycoprotein with a Fluorescent Dansyl C 11 Fatty Acid · AZI B302 · binds PHE114, TRP115, LYS116, GLU126, PHE127

Residues it binds most

HIS 80, THR 66, ARG 55, PHE 52, TYR 39, GLY 50, ASN 48, VAL 43, ASP 37, LYS 34 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • CU · Copper (II) ion
  • ZN · Zinc ion
  • ACE · Acetyl group
  • GOL · Glycerol
  • 0QE · Chloromethane
  • CDL · Cardiolipin
  • CUA · Dinuclear copper ion
  • MG · Magnesium ion
  • SO4 · Sulfate ion

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