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Ligand · YYB

YYB · 1,5-anhydro-3-O-methyl-2,6-di-O-sulfo-D-glucitol

YYB, 1,5-anhydro-3-O-methyl-2,6-di-O-sulfo-D-glucitol (C7 H14 O11 S2, 338.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
YYB
Formula
C7 H14 O11 S2
Class
sugar
Structures
2
PDB entries
1

Binding sites

YYB in 2 structures; the first of them:

  • 1SR5 · Antithrombin-anhydrothrombin-heparin ternary complex structure · YYB D1 · binds ARG47, SER112, GLU113, LYS114
  • 1SR5 · Antithrombin-anhydrothrombin-heparin ternary complex structure · YYB D1 · binds ARG47, SER112, GLU113, LYS114

Residues it binds most

ARG 2, GLU 2, LYS 2, SER 2 (residue and the binding sites it lines).

Found with

  • GU4 · 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose
  • GU6 · 2,3,6-tri-O-sulfo-alpha-D-glucopyranose
  • GU8 · 2,3,6-tri-O-methyl-beta-D-glucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • U9D · 4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose
  • U9G · 2,3-di-O-methyl-6-O-sulfo-alpha-D-glucopyranose
  • U9J · (2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol
  • U9M · (2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol

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