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Ligand · U9D

U9D · 4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose

U9D, 4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose (C9 H18 O5, 206.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
U9D
Formula
C9 H18 O5
Class
sugar
Structures
2
PDB entries
1

Binding sites

U9D in 2 structures; the first of them:

  • 1SR5 · Antithrombin-anhydrothrombin-heparin ternary complex structure · U9D D7
  • 1SR5 · Antithrombin-anhydrothrombin-heparin ternary complex structure · U9D D7

Found with

  • GU4 · 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose
  • GU6 · 2,3,6-tri-O-sulfo-alpha-D-glucopyranose
  • GU8 · 2,3,6-tri-O-methyl-beta-D-glucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • U9G · 2,3-di-O-methyl-6-O-sulfo-alpha-D-glucopyranose
  • U9J · (2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol
  • U9M · (2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol
  • YYB · 1,5-anhydro-3-O-methyl-2,6-di-O-sulfo-D-glucitol

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