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Ligand · V7B

V7B · [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate

V7B, [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl]…

Component
V7B
Formula
C43 H80 O15
Class
ligand
Structures
4
PDB entries
4

Binding sites

V7B in 4 structures; the first of them:

  • 7O0U · Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4… · V7B af101 · binds LYS132, THR46, LEU47, CYS49, VAL50, PRO57, THR58, TRP59 and 16 more
  • 7O0V · Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5… · V7B L1006 · binds LYS132, THR46, LEU47, CYS49, VAL50, ALA53, PRO57, THR58 and 16 more
  • 7O0W · Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at… · V7B af101 · binds LYS132, THR46, LEU47, CYS49, VAL50, PRO57, THR58, TRP59 and 16 more
  • 7O0X · Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at… · V7B af101 · binds LYS126, LYS132, THR46, LEU47, CYS49, VAL50, ALA53, PRO57 and 19 more

Residues it binds most

VAL 8, LEU 8, SER 8, ILE 8, PHE 8, GLN 8, TYR 8, GLU 8, THR 4, ALA 6 (residue and the binding sites it lines).

Found with

  • 0V9 · (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
  • CRT · Spirilloxanthin
  • HEC · Heme C
  • MQ8 · Menaquinone 8
  • PGW · (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
  • UYH · [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate
  • V75 · (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid
  • V7N · (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid
  • FE · Fe (III) ion

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