Ligand · V7B
V7B · [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate
V7B, [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl]…
- Component
- V7B
- Formula
- C43 H80 O15
- Class
- ligand
- Structures
- 4
- PDB entries
- 4
Binding sites
V7B in 4 structures; the first of them:
- 7O0U · Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4… · V7B af101 · binds LYS132, THR46, LEU47, CYS49, VAL50, PRO57, THR58, TRP59 and 16 more
- 7O0V · Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5… · V7B L1006 · binds LYS132, THR46, LEU47, CYS49, VAL50, ALA53, PRO57, THR58 and 16 more
- 7O0W · Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at… · V7B af101 · binds LYS132, THR46, LEU47, CYS49, VAL50, PRO57, THR58, TRP59 and 16 more
- 7O0X · Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at… · V7B af101 · binds LYS126, LYS132, THR46, LEU47, CYS49, VAL50, ALA53, PRO57 and 19 more
Residues it binds most
VAL 8, LEU 8, SER 8, ILE 8, PHE 8, GLN 8, TYR 8, GLU 8, THR 4, ALA 6 (residue and the binding sites it lines).
Found with
- 0V9 · (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate
- BCL · Bacteriochlorophyll A
- BPH · Bacteriopheophytin A
- CD4 · (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate
- CRT · Spirilloxanthin
- HEC · Heme C
- MQ8 · Menaquinone 8
- PGW · (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
- UYH · [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate
- V75 · (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid
- V7N · (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid
- FE · Fe (III) ion
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